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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292656 (124 seq.)
>W1710863421
LMFC01000002
Actinomycetota
Cellulomonas sp. Root485 [LMFC]
364635
364708
+
Arg
ACG
[ENA]
¡û
>W1710863608
LMFG01000001
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
299319
299246
-
Arg
ACG
[ENA]
¡û
>W1710864176
LMFR01000003
Actinomycetota
Microbacterium sp. Root53 [LMFR]
68270
68343
+
Arg
ACG
[ENA]
¡û
>W1710899471
LNIZ01000002
Actinomycetota
Trueperella bernardiae [LNIZ]
194211
194138
-
Arg
ACG
[ENA]
¡û
>W1711185072
LWNB01000019
Actinomycetota
Trueperella sp. HMSC08B05 [LWNB]
6791
6864
+
Arg
ACG
[ENA]
¡û
>W1711350148
MCQY01000113
Actinomycetota
Mycobacterium tuberculosis [MCQY]
4102
4029
-
Arg
ACG
[ENA]
¡û
>W1711575811
MNJM01000413
Actinomycetota
Actinobacteria bacterium 13_1_20CM_3_71_11 [MNJM]
14508
14583
+
Arg
ACG
[ENA]
¡û
>W131161934
AQYD01000007
Actinomycetota
Microbacterium sp. 292MF [AQYD]
863654
863581
-
Arg
ACG
[ENA]
¡û
>W131165304
ARBL01000006
Actinomycetota
Catelliglobosispora koreensis DSM 44566 [ARBL]
484222
484147
-
Arg
ACG
[ENA]
¡û
>WENV180008142
FLSB01003778
[FLSB] metagenome; saliva
274
349
+
Arg
ACG
[ENA]
¢þ
>WENV180550058
OCIZ01008424
[OCIZ] human oral metagenome; human oral
541
466
-
Arg
ACG
[ENA]
¢þ
>WENV180597521
OCPL01003514
[OCPL] human gut metagenome; ENVO:feces
558
485
-
Arg
ACG
[ENA]
¢þ
>WENV180632247
OCQY01287309
[OCQY] human gut metagenome; human gut
93
168
+
Arg
ACG
[ENA]
¢þ
>WENV180704681
ODEJ01000014
[ODEJ] human metagenome; G_DNA_Tongue dorsum
8005
7930
-
Arg
ACG
[ENA]
¢þ
>WENV180708740
ODFJ01006355
[ODFJ] human metagenome; G_DNA_Tongue dorsum
3890
3815
-
Arg
ACG
[ENA]
¢þ
>WENV180719396
ODGJ01001245
[ODGJ] human metagenome; G_DNA_Tongue dorsum
1260
1185
-
Arg
ACG
[ENA]
¢þ
>WENV180724623
ODGR01001658
[ODGR] human metagenome; G_DNA_Tongue dorsum
5829
5904
+
Arg
ACG
[ENA]
¢þ
>WENV180757519
ODHW01000568
[ODHW] human metagenome; G_DNA_Tongue dorsum
9255
9330
+
Arg
ACG
[ENA]
¢þ
>WENV180763607
ODIA01002166
[ODIA] human metagenome; G_DNA_Tongue dorsum
3999
3924
-
Arg
ACG
[ENA]
¢þ
>WENV180767814
ODIG01000782
[ODIG] human metagenome; G_DNA_Tongue dorsum
19366
19291
-
Arg
ACG
[ENA]
¢þ
>WENV180773708
ODIJ01001405
[ODIJ] human metagenome; G_DNA_Tongue dorsum
10628
10553
-
Arg
ACG
[ENA]
¢þ
>WENV180775564
ODIK01001178
[ODIK] human metagenome; G_DNA_Tongue dorsum
9615
9540
-
Arg
ACG
[ENA]
¢þ
>WENV180779835
ODIN01019000
[ODIN] human metagenome; G_DNA_Throat
865
790
-
Arg
ACG
[ENA]
¢þ
>WENV180782452
ODIQ01000019
[ODIQ] human metagenome; G_DNA_Tongue dorsum
9403
9328
-
Arg
ACG
[ENA]
¢þ
>WENV180790059
ODIT01003295
[ODIT] human metagenome; G_DNA_Tongue dorsum
4640
4715
+
Arg
ACG
[ENA]
¢þ
>WENV180792217
ODIW01000153
[ODIW] human metagenome; G_DNA_Tongue dorsum
10244
10169
-
Arg
ACG
[ENA]
¢þ
>WENV180794381
ODIZ01000314
[ODIZ] human metagenome; G_DNA_Tongue dorsum
12109
12184
+
Arg
ACG
[ENA]
¢þ
>WENV180801907
ODJE01000013
[ODJE] human metagenome; G_DNA_Tongue dorsum
136962
137037
+
Arg
ACG
[ENA]
¢þ
>WENV180806852
ODJI01000066
[ODJI] human metagenome; G_DNA_Tongue dorsum
9646
9571
-
Arg
ACG
[ENA]
¢þ
>WENV180815619
ODJP01000904
[ODJP] human metagenome; G_DNA_Tongue dorsum
8830
8755
-
Arg
ACG
[ENA]
¢þ
>WENV180819554
ODJR01000166
[ODJR] human metagenome; G_DNA_Tongue dorsum
21246
21321
+
Arg
ACG
[ENA]
¢þ
>WENV180821498
ODJS01012567
[ODJS] human metagenome; G_DNA_Tongue dorsum
1256
1181
-
Arg
ACG
[ENA]
¢þ
>WENV180830242
ODKB01001098
[ODKB] human metagenome; G_DNA_Tongue dorsum
1113
1038
-
Arg
ACG
[ENA]
¢þ
>WENV180854333
ODKX01002263
[ODKX] human metagenome; G_DNA_Tongue dorsum
5878
5953
+
Arg
ACG
[ENA]
¢þ
>WENV180860783
ODLE01000103
[ODLE] human metagenome; G_DNA_Tongue dorsum
10330
10255
-
Arg
ACG
[ENA]
¢þ
>WENV180864125
ODLH01011641
[ODLH] human metagenome; G_DNA_Tongue dorsum
1972
1897
-
Arg
ACG
[ENA]
¢þ
>WENV180865435
ODLJ01000045
[ODLJ] human metagenome; G_DNA_Tongue dorsum
74004
74079
+
Arg
ACG
[ENA]
¢þ
>WENV180873035
ODLP01000646
[ODLP] human metagenome; G_DNA_Tongue dorsum
11927
12002
+
Arg
ACG
[ENA]
¢þ
>WENV180874178
ODLQ01000015
[ODLQ] human metagenome; G_DNA_Tongue dorsum
37362
37287
-
Arg
ACG
[ENA]
¢þ
>WENV180879523
ODLZ01000843
[ODLZ] human metagenome; G_DNA_Tongue dorsum
9296
9371
+
Arg
ACG
[ENA]
¢þ
>WENV180882624
ODMC01000229
[ODMC] human metagenome; G_DNA_Tongue dorsum
43873
43798
-
Arg
ACG
[ENA]
¢þ
>WENV180890254
ODMO01000406
[ODMO] human metagenome; G_DNA_Tongue dorsum
9145
9220
+
Arg
ACG
[ENA]
¢þ
>WENV180896749
ODNI01002082
[ODNI] human metagenome; G_DNA_Tongue dorsum
5182
5107
-
Arg
ACG
[ENA]
¢þ
>WENV180900072
ODOJ01000372
[ODOJ] human metagenome; G_DNA_Tongue dorsum
12269
12344
+
Arg
ACG
[ENA]
¢þ
>WENV180901559
ODOK01000548
[ODOK] human metagenome; G_DNA_Tongue dorsum
5834
5909
+
Arg
ACG
[ENA]
¢þ
>WENV180920276
ODTH01003009
[ODTH] human metagenome; G_DNA_Tongue dorsum
5859
5934
+
Arg
ACG
[ENA]
¢þ
>WENV180929293
ODTN01001431
[ODTN] human metagenome; G_DNA_Tongue dorsum
481
556
+
Arg
ACG
[ENA]
¢þ
>WENV180931916
ODTP01015162
[ODTP] human metagenome; G_DNA_Tongue dorsum
2042
1967
-
Arg
ACG
[ENA]
¢þ
>WENV180949037
ODUG01006999
[ODUG] human metagenome; G_DNA_Tongue dorsum
3013
3088
+
Arg
ACG
[ENA]
¢þ
>WENV180954289
ODUJ01001337
[ODUJ] human metagenome; G_DNA_Tongue dorsum
9188
9263
+
Arg
ACG
[ENA]
¢þ
>WENV180959125
ODUM01000091
[ODUM] human metagenome; G_DNA_Tongue dorsum
75257
75332
+
Arg
ACG
[ENA]
¢þ
>WENV180967462
ODUT01000682
[ODUT] human metagenome; G_DNA_Tongue dorsum
10416
10341
-
Arg
ACG
[ENA]
¢þ
>WENV180977424
ODUZ01000732
[ODUZ] human metagenome; G_DNA_Tongue dorsum
5842
5917
+
Arg
ACG
[ENA]
¢þ
>WENV180985143
ODVJ01000799
[ODVJ] human metagenome; G_DNA_Tongue dorsum
10097
10022
-
Arg
ACG
[ENA]
¢þ
>WENV180988029
ODVL01000044
[ODVL] human metagenome; G_DNA_Tongue dorsum
21761
21686
-
Arg
ACG
[ENA]
¢þ
>WENV180990566
ODVN01002279
[ODVN] human metagenome; G_DNA_Tongue dorsum
8802
8727
-
Arg
ACG
[ENA]
¢þ
>WENV181011437
ODWI01031557
[ODWI] human metagenome; G_DNA_Tongue dorsum
38
113
+
Arg
ACG
[ENA]
¢þ
>WENV181013369
ODWN01000472
[ODWN] human metagenome; G_DNA_Tongue dorsum
15231
15306
+
Arg
ACG
[ENA]
¢þ
>WENV181016288
ODWR01000617
[ODWR] human metagenome; G_DNA_Tongue dorsum
11089
11014
-
Arg
ACG
[ENA]
¢þ
>WENV181020843
ODWV01000410
[ODWV] human metagenome; G_DNA_Tongue dorsum
9342
9267
-
Arg
ACG
[ENA]
¢þ
>WENV181032706
ODXN01000452
[ODXN] human metagenome; G_DNA_Tongue dorsum
16632
16557
-
Arg
ACG
[ENA]
¢þ
>WENV181039031
ODXQ01008440
[ODXQ] human metagenome; G_DNA_Tongue dorsum
3843
3768
-
Arg
ACG
[ENA]
¢þ
>WENV181040829
ODXS01001331
[ODXS] human metagenome; G_DNA_Tongue dorsum
5077
5002
-
Arg
ACG
[ENA]
¢þ
>WENV181044517
ODXV01013000
[ODXV] human metagenome; G_DNA_Tongue dorsum
2061
1986
-
Arg
ACG
[ENA]
¢þ
>WENV181045544
ODXW01000433
[ODXW] human metagenome; G_DNA_Tongue dorsum
22223
22148
-
Arg
ACG
[ENA]
¢þ
>WENV181058382
ODYL01009445
[ODYL] human metagenome; G_DNA_Tongue dorsum
457
532
+
Arg
ACG
[ENA]
¢þ
>WENV181060087
ODYM01037526
[ODYM] human metagenome; G_DNA_Tongue dorsum
227
302
+
Arg
ACG
[ENA]
¢þ
>WENV181069281
ODZZ01026233
[ODZZ] human metagenome; G_DNA_Tongue dorsum
126
201
+
Arg
ACG
[ENA]
¢þ
>WENV181073295
OEAO01000080
[OEAO] human metagenome; G_DNA_Tongue dorsum
11267
11192
-
Arg
ACG
[ENA]
¢þ
>WENV181086312
OEAY01000370
[OEAY] human metagenome; G_DNA_Tongue dorsum
9287
9362
+
Arg
ACG
[ENA]
¢þ
>WENV181094848
OEBY01001479
[OEBY] human metagenome; G_DNA_Tongue dorsum
5271
5196
-
Arg
ACG
[ENA]
¢þ
>WENV181096940
OECA01001033
[OECA] human metagenome; G_DNA_Tongue dorsum
1973
1898
-
Arg
ACG
[ENA]
¢þ
>WENV181102184
OECT01001171
[OECT] human metagenome; G_DNA_Tongue dorsum
10907
10832
-
Arg
ACG
[ENA]
¢þ
>WENV181105237
OEED01001915
[OEED] human metagenome; G_DNA_Tongue dorsum
4728
4653
-
Arg
ACG
[ENA]
¢þ
>WENV181109284
OEEJ01020085
[OEEJ] human metagenome; G_DNA_Tongue dorsum
437
362
-
Arg
ACG
[ENA]
¢þ
>WENV181112497
OEEL01001034
[OEEL] human metagenome; G_DNA_Tongue dorsum
10907
10832
-
Arg
ACG
[ENA]
¢þ
>WENV181114154
OEEO01000158
[OEEO] human metagenome; G_DNA_Supragingival plaque
5831
5906
+
Arg
ACG
[ENA]
¢þ
>WENV181124709
OEFT01000919
[OEFT] human metagenome; G_DNA_Tongue dorsum
9295
9370
+
Arg
ACG
[ENA]
¢þ
>WENV181128760
OEFX01000150
[OEFX] human metagenome; G_DNA_Tongue dorsum
33630
33705
+
Arg
ACG
[ENA]
¢þ
>WENV181135315
OEGG01010137
[OEGG] human metagenome; G_DNA_Tongue dorsum
951
876
-
Arg
ACG
[ENA]
¢þ
>WENV181138835
OEGN01000973
[OEGN] human metagenome; G_DNA_Tongue dorsum
4598
4523
-
Arg
ACG
[ENA]
¢þ
>WENV181141039
OEGT01000870
[OEGT] human metagenome; G_DNA_Throat
5215
5140
-
Arg
ACG
[ENA]
¢þ
>WENV181151288
OEHW01034367
[OEHW] human metagenome; G_DNA_Tongue dorsum
121
196
+
Arg
ACG
[ENA]
¢þ
>WENV181161185
OEIK01206099
[OEIK] human metagenome; G_DNA_Supragingival plaque
82
6
-
Arg
ACG
[ENA]
¢þ
>W141143151
AWSC01000009
Actinomycetota
Actinomyces graevenitzii F0530 [AWSC]
8174
8099
-
Arg
ACG
[ENA]
¡û
>WENV182837571
OKGJ01000476
[OKGJ] human gut metagenome; human gut
4343
4416
+
Arg
ACG
[ENA]
¢þ
>WENV183307267
OLTD01009170
[OLTD] human gut metagenome; faeces
445
370
-
Arg
ACG
[ENA]
¢þ
>WENV183511611
OMJG01001052
[OMJG] food metagenome; Cotija cheese
3401
3474
+
Arg
ACG
[ENA]
¢þ
>WENV170175742
CEOS01003165
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
732
805
+
Arg
ACG
[ENA]
¢þ
>WENV170347254
CETG01117110
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
345
418
+
Arg
ACG
[ENA]
¢þ
>WENV170369707
CETR01027541
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1713
1640
-
Arg
ACG
[ENA]
¢þ
>WENV170377493
CETU01162342
[CETU] marine metagenome genome assembly TARA_142_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
395
322
-
Arg
ACG
[ENA]
¢þ
>WENV170713123
LNFM01024256
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1769
1694
-
Arg
ACG
[ENA]
¢þ
>WENV170765569
LWDU01038083
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
894
967
+
Arg
ACG
[ENA]
¢þ
>WENV171003412
NNBT01010140
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
127
200
+
Arg
ACG
[ENA]
¢þ
>C181212702
LS483427
Actinomycetota
Arcanobacterium haemolyticum NCTC8452 [LS483427]
284849
284776
-
Arg
ACG
-
¡û
>C191026485
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
8144592
8144519
-
Arg
ACG
-
¡û
>C191104223
CP033325
Actinomycetota
Georgenia faecalis ZLJ0423 [CP033325]
155691
155765
+
Arg
ACG
-
¡û
>C191164685
CP039291
Actinomycetota
Cellulomonas shaoxiangyii Z28 [CP039291]
3408980
3408907
-
Arg
ACG
-
¡û
>C191211520
LR134476
Actinomycetota
Trueperella bialowiezensis NCTC13354 [LR134476]
1019415
1019488
+
Arg
ACG
-
¡û
>W1910832071
MYFP01000067
Actinomycetota
Microbacterium sp. MEC084 [MYFP]
436
363
-
Arg
ACG
[ENA]
¡û
>W1911535345
OLMV01000002
Actinomycetota
Microbacterium timonense Marseille-P5731 [OLMV]
356511
356438
-
Arg
ACG
[ENA]
¡û
>W1911597313
PNHV01000003
Actinomycetota
Actinomyces graevenitzii UMB0286 [PNHV]
5894
5969
+
Arg
ACG
[ENA]
¡û
>W1810187924
PKHY01000003
Actinomycetota
Trueperella bernardiae UMB0116 [PKHY]
141302
141229
-
Arg
ACG
[ENA]
¡û
>W1810580316
QETB01000001
Actinomycetota
Ancrocorticia populi sk1b4 [QETB]
196941
196868
-
Arg
ACG
[ENA]
¡û
>W1810861607
QTTZ01000001
Actinomycetota
Microbacterium trichothecenolyticum ZKA46 [QTTZ]
3688101
3688174
+
Arg
ACG
[ENA]
¡û
>W10127228
AEEE01000002
Actinomycetota
Mobiluncus curtisii subsp. curtisii ATCC 35241 [AEEE]
855
928
+
Arg
ACG
[ENA]
¡û
>W10127261
AEEE01000014
Actinomycetota
Mobiluncus curtisii subsp. curtisii ATCC 35241 [AEEE]
288475
288402
-
Arg
ACG
[ENA]
¡û
>C10100461
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
1925818
1925891
+
Arg
ACG
[Ensembl]
¡û
>W11134716
AEEE01000002
Actinomycetota
Mobiluncus curtisii subsp. curtisii ATCC 35241 [AEEE]
855
928
+
Arg
ACG
[ENA]
¡û
>W11134749
AEEE01000014
Actinomycetota
Mobiluncus curtisii subsp. curtisii ATCC 35241 [AEEE]
288475
288402
-
Arg
ACG
[ENA]
¡û
>W11143526
AEPY01000010
Actinomycetota
Mobiluncus curtisii ATCC 51333 [AEPY]
118360
118285
-
Arg
ACG
[ENA]
¡û
>W1610051500
BBGX01000164
Actinomycetota
Cellulomonas xylanilytica JCM 14281 [BBGX]
1614
1689
+
Arg
ACG
[ENA]
¡û
>W1610069588
BCSP01000004
Actinomycetota
Gulosibacter bifidus NBRC 103089 [BCSP]
29228
29155
-
Arg
ACG
[ENA]
¡û
>W121000069
ACRN01000009
Actinomycetota
Actinomyces graevenitzii C83 [ACRN]
6186
6261
+
Arg
ACG
[ENA]
¡û
>W1610725767
LMFC01000002
Actinomycetota
Cellulomonas sp. Root485 [LMFC]
364635
364708
+
Arg
ACG
[ENA]
¡û
>W1610725954
LMFG01000001
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
299319
299246
-
Arg
ACG
[ENA]
¡û
>W1610726522
LMFR01000003
Actinomycetota
Microbacterium sp. Root53 [LMFR]
68270
68343
+
Arg
ACG
[ENA]
¡û
>W1610759874
LNIZ01000002
Actinomycetota
Trueperella bernardiae [LNIZ]
194211
194138
-
Arg
ACG
[ENA]
¡û
>W1710047878
BBGX01000164
Actinomycetota
Cellulomonas xylanilytica JCM 14281 [BBGX]
1614
1689
+
Arg
ACG
[ENA]
¡û
>W1710066961
BCSP01000004
Actinomycetota
Gulosibacter bifidus NBRC 103089 [BCSP]
29228
29155
-
Arg
ACG
[ENA]
¡û
>W1710504557
FMIB01000002
Actinomycetota
Micromonospora chersina [FMIB]
4442768
4442841
+
Arg
ACG
[ENA]
¡û
>W1710556199
FOKA01000006
Actinomycetota
Cellulomonas marina [FOKA]
125413
125486
+
Arg
ACG
[ENA]
¡û
>W1710743645
LGYI01000012
Actinomycetota
Trueperella bernardiae [LGYI]
393
320
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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