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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294617 (23 seq.)
>W131053713
ANAH01000053
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
211381
211456
+
Thr
GGT
[ENA]
¡û
>C014488
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
3593413
3593488
+
Thr
GGT
[Ensembl]
¡û
>WENV170646164
JQGG01005276
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
126
201
+
Thr
GGT
[ENA]
¢þ
>C181057877
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
7905755
7905680
-
Thr
GGT
-
¡û
>C181059861
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
114611
114536
-
Thr
GGT
-
¡û
>C181060629
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
3606280
3606355
+
Thr
GGT
-
¡û
>C191013124
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
3640679
3640754
+
Thr
GGT
-
¡û
>C191013189
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
3527431
3527506
+
Thr
GGT
-
¡û
>C191013255
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
3384859
3384934
+
Thr
GGT
-
¡û
>C191013385
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
3568979
3569054
+
Thr
GGT
-
¡û
>C191013450
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
3568979
3569054
+
Thr
GGT
-
¡û
>C191128677
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
5976634
5976559
-
Thr
GGT
-
¡û
>W1810452229
PZOX01000018
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
309467
309542
+
Thr
GGT
[ENA]
¡û
>W1810884673
QUMU01000002
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
681
606
-
Thr
GGT
[ENA]
¡û
>C151008174
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
4751528
4751603
+
Thr
GGT
[Ensembl]
¡û
>C151091043
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
4941844
4941769
-
Thr
GGT
[Ensembl]
¡û
>C11114317
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
5487586
5487661
+
Thr
GGT
[Ensembl]
¡û
>C121012077
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
6266903
6266828
-
Thr
GGT
[Ensembl]
¡û
>W121102890
AKXT01000050
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
123380
123455
+
Thr
GGT
[ENA]
¡û
>W121103124
AKYI01000852
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
173
98
-
Thr
GGT
[ENA]
¡û
>C131011662
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
4436434
4436509
+
Thr
GGT
[Ensembl]
¡û
>W1710513733
FNAJ01000012
Myxococcota
Myxococcus virescens [FNAJ]
230859
230934
+
Thr
GGT
[ENA]
¡û
>W1710529809
FNOH01000011
Myxococcota
Myxococcus xanthus [FNOH]
202
127
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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