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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.295033 (79 seq.)
>W1711903055
MZGX01000004
Bacillota
Ruminiclostridium hungatei [MZGX]
118065
117990
-
Phe
GAA
[ENA]
¡û
>W1711903067
MZGX01000015
Bacillota
Ruminiclostridium hungatei [MZGX]
1963
1888
-
Phe
GAA
[ENA]
¡û
>W131098518
AORV01000021
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
111990
112065
+
Phe
GAA
[ENA]
¡û
>W131098545
AORV01000046
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
37113
37038
-
Phe
GAA
[ENA]
¡û
>WENV180167145
OAVO01005934
[OAVO] human gut metagenome; faeces
1041
966
-
Phe
GAA
[ENA]
¢þ
>WENV180169365
OAVS01006578
[OAVS] human gut metagenome; faeces
134
59
-
Phe
GAA
[ENA]
¢þ
>WENV180174273
OAWA01012778
[OAWA] human gut metagenome; faeces
140
65
-
Phe
GAA
[ENA]
¢þ
>WENV180220395
OBAS01059637
[OBAS] human gut metagenome; human gut
479
554
+
Phe
GAA
[ENA]
¢þ
>WENV180470175
OBYM01084733
[OBYM] human gut metagenome; faeces
138
213
+
Phe
GAA
[ENA]
¢þ
>WENV180496473
OCAD01002635
[OCAD] human gut metagenome; faeces
125
50
-
Phe
GAA
[ENA]
¢þ
>WENV180501608
OCAK01002591
[OCAK] human gut metagenome; faeces
785
710
-
Phe
GAA
[ENA]
¢þ
>WENV180543168
OCHT01078953
[OCHT] human gut metagenome; human gut
226
301
+
Phe
GAA
[ENA]
¢þ
>WENV180576803
OCLZ01099743
[OCLZ] human gut metagenome; human gut
133
208
+
Phe
GAA
[ENA]
¢þ
>WENV180577367
OCMA01015200
[OCMA] human gut metagenome; human gut
72
-1
-
Phe
GAA
[ENA]
¢þ
>WENV180630697
OCQT01133047
[OCQT] human gut metagenome; human gut
139
64
-
Phe
GAA
[ENA]
¢þ
>WENV180633798
OCRA01065389
[OCRA] human gut metagenome; human gut
290
365
+
Phe
GAA
[ENA]
¢þ
>WENV180710463
ODFM01001696
[ODFM] human metagenome; G_DNA_Stool
7120
7045
-
Phe
GAA
[ENA]
¢þ
>WENV180716601
ODFZ01000828
[ODFZ] human metagenome; G_DNA_Stool
9085
9160
+
Phe
GAA
[ENA]
¢þ
>WENV181062127
ODYN01061329
[ODYN] human metagenome; G_DNA_Stool
134
59
-
Phe
GAA
[ENA]
¢þ
>W141146390
AWVN01000133
Bacillota
Oscillibacter sp. KLE 1728 [AWVN]
56431
56506
+
Phe
GAA
[ENA]
¡û
>W141146442
AWVO01000184
Bacillota
Oscillibacter sp. KLE 1745 [AWVO]
117
192
+
Phe
GAA
[ENA]
¡û
>WENV181657072
OGOC01012571
[OGOC] human gut metagenome; faeces
173
247
+
Phe
GAA
[ENA]
¢þ
>WENV181711148
OGPO01014135
[OGPO] human gut metagenome; faeces
1617
1692
+
Phe
GAA
[ENA]
¢þ
>WENV182087558
OHGW01007108
[OHGW] human gut metagenome; feces
244
318
+
Phe
GAA
[ENA]
¢þ
>WENV182101437
OHHU01000169
[OHHU] human gut metagenome; feces
489
415
-
Phe
GAA
[ENA]
¢þ
>WENV182166632
OHMP01049690
[OHMP] human gut metagenome; feces
134
59
-
Phe
GAA
[ENA]
¢þ
>W141224465
BAIH01000037
Bacillota
Oscillospiraceae bacterium VE202-24 [BAIH]
14828
14903
+
Phe
GAA
[ENA]
¡û
>WENV182537888
OIXH01022995
[OIXH] human gut metagenome; faeces
2269
2195
-
Phe
GAA
[ENA]
¢þ
>WENV182717392
OJPK01015917
[OJPK] human gut metagenome; stool sample
249
324
+
Phe
GAA
[ENA]
¢þ
>WENV182725419
OJPT01001448
[OJPT] human gut metagenome; stool sample
9078
9003
-
Phe
GAA
[ENA]
¢þ
>W141279273
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
1307196
1307121
-
Phe
GAA
[ENA]
¡û
>W141279294
JAGE01000002
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
233547
233472
-
Phe
GAA
[ENA]
¡û
>WENV182894596
OKSL01009811
[OKSL] human gut metagenome; feces
839
765
-
Phe
GAA
[ENA]
¢þ
>WENV182959896
OKWJ01000819
[OKWJ] human gut metagenome; human gut
66
140
+
Phe
GAA
[ENA]
¢þ
>WENV183091760
OLKG01003286
[OLKG] human gut metagenome; human gut
134
59
-
Phe
GAA
[ENA]
¢þ
>WENV183268161
OLRU01002333
[OLRU] human gut metagenome; faeces
1795
1720
-
Phe
GAA
[ENA]
¢þ
>WENV183498262
OMGO01003625
[OMGO] human gut metagenome; human gut
141
66
-
Phe
GAA
[ENA]
¢þ
>WENV183535950
OOAG01000580
[OOAG] human gut metagenome; human gut
163
238
+
Phe
GAA
[ENA]
¢þ
>WENV183564116
OOBY01000371
[OOBY] human gut metagenome; human gut
12490
12565
+
Phe
GAA
[ENA]
¢þ
>WENV183586697
OOCT01000270
[OOCT] human gut metagenome; human gut
19401
19476
+
Phe
GAA
[ENA]
¢þ
>WENV183753220
PPYE01051574
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1146
1071
-
Phe
GAA
[ENA]
¢þ
>WENV183758074
PPYE01173597
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
162
237
+
Phe
GAA
[ENA]
¢þ
>WENV183768848
PPYE01404714
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1082
1007
-
Phe
GAA
[ENA]
¢þ
>WENV170045272
CDYX01033791
[CDYX] gut metagenome; human stools
173795
173870
+
Phe
GAA
[ENA]
¢þ
>WENV170049092
CDZA01045185
[CDZA] gut metagenome; human stools
11334
11259
-
Phe
GAA
[ENA]
¢þ
>WENV170062323
CDZJ01009381
[CDZJ] gut metagenome; human stools
59231
59306
+
Phe
GAA
[ENA]
¢þ
>WENV170064910
CDZL01008532
[CDZL] gut metagenome; human stools
58476
58551
+
Phe
GAA
[ENA]
¢þ
>WENV170069502
CDZP01044995
[CDZP] gut metagenome; human stools
59024
59099
+
Phe
GAA
[ENA]
¢þ
>WENV170094852
CEAI01010324
[CEAI] gut metagenome; human stools
4704
4779
+
Phe
GAA
[ENA]
¢þ
>WENV170099087
CEAO01012479
[CEAO] gut metagenome; human stools
336
261
-
Phe
GAA
[ENA]
¢þ
>WENV170099199
CEAO01016330
[CEAO] gut metagenome; human stools
6
81
+
Phe
GAA
[ENA]
¢þ
>WENV170637680
JFBN01350723
[JFBN] chicken gut metagenome; ceca of Broiler chicken
157
232
+
Phe
GAA
[ENA]
¢þ
>WENV170638050
JFBN01406416
[JFBN] chicken gut metagenome; ceca of Broiler chicken
102
27
-
Phe
GAA
[ENA]
¢þ
>WENV170686800
LFRM01163637
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
26856
26931
+
Phe
GAA
[ENA]
¢þ
>WENV170687810
LFRM01212213
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3977
3902
-
Phe
GAA
[ENA]
¢þ
>WENV170688734
LFRM01259833
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
76
1
-
Phe
GAA
[ENA]
¢þ
>WENV170688966
LFRM01270250
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
269
194
-
Phe
GAA
[ENA]
¢þ
>WENV170716633
LSQX01006091
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
427
352
-
Phe
GAA
[ENA]
¢þ
>WENV170722607
LSQX01235319
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
163
238
+
Phe
GAA
[ENA]
¢þ
>WENV170722948
LSQX01249638
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
116
41
-
Phe
GAA
[ENA]
¢þ
>WENV170725519
LSQX01345359
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
116
41
-
Phe
GAA
[ENA]
¢þ
>WENV170777968
LXOW01343283
[LXOW] bovine gut metagenome; Cow rumen
8327
8402
+
Phe
GAA
[ENA]
¢þ
>C191002903
AP018532
Bacillota
Oscillibacter sp. PEA192 [AP018532]
512089
512164
+
Phe
GAA
-
¡û
>C09103068
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
2111073
2111148
+
Phe
GAA
[Ensembl]
¡û
>C09103089
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3456056
3455981
-
Phe
GAA
[Ensembl]
¡û
>W1810677416
QKMR01000007
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
56400
56325
-
Phe
GAA
[ENA]
¡û
>W1810759855
QPJT01000001
Bacillota
Anaerobacterium chartisolvens DSM 27016 [QPJT]
236226
236301
+
Phe
GAA
[ENA]
¡û
>W1511633416
LDJB01000002
Bacillota
Peptococcaceae bacterium 1109 [LDJB]
397053
396978
-
Phe
GAA
[ENA]
¡û
>C121009836
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
2410729
2410804
+
Phe
GAA
[Ensembl]
¡û
>C121009856
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4138228
4138153
-
Phe
GAA
[Ensembl]
¡û
>W1610043736
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49429
49504
+
Phe
GAA
[ENA]
¡û
>W1610043763
BBAA01000025
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
6667
6592
-
Phe
GAA
[ENA]
¡û
>W1610607021
LFTN01000077
Bacillota
Clostridiales bacterium DTU087 [LFTN]
26856
26931
+
Phe
GAA
[ENA]
¡û
>W1610607035
LFTN01000146
Bacillota
Clostridiales bacterium DTU087 [LFTN]
76
1
-
Phe
GAA
[ENA]
¡û
>W1710040896
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49429
49504
+
Phe
GAA
[ENA]
¡û
>W1710040923
BBAA01000025
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
6667
6592
-
Phe
GAA
[ENA]
¡û
>W1710573079
FOXE01000001
Bacillota
Oscillibacter sp. PC13 [FOXE]
76121
76046
-
Phe
GAA
[ENA]
¡û
>W1710728308
LFTN01000077
Bacillota
Clostridiales bacterium DTU087 [LFTN]
26856
26931
+
Phe
GAA
[ENA]
¡û
>W1710728322
LFTN01000146
Bacillota
Clostridiales bacterium DTU087 [LFTN]
76
1
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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