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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297674 (83 seq.)
>W1710777284
LJBJ02000010
Actinomycetota
Rothia kristinae [LJBJ]
29360
29287
-
Pro
TGG
[ENA]
¡û
>W1710996363
LQBJ01000010
Actinomycetota
Kocuria palustris [LQBJ]
351981
351908
-
Pro
TGG
[ENA]
¡û
>W1711093384
LTEY01000015
Actinomycetota
Kocuria sp. HMSC066H03 [LTEY]
80410
80337
-
Pro
TGG
[ENA]
¡û
>W1711178723
LWGZ01000646
Actinomycetota
Rothia kristinae [LWGZ]
6511
6438
-
Pro
TGG
[ENA]
¡û
>W1711281833
LZMM01000076
Actinomycetota
Kocuria sp. ICS0012 [LZMM]
22131
22204
+
Pro
TGG
[ENA]
¡û
>W1711589210
MODZ01000007
Actinomycetota
Rothia kristinae [MODZ]
53462
53389
-
Pro
TGG
[ENA]
¡û
>W131230921
AUIA01000010
Actinomycetota
Propionicicella superfundia DSM 22317 [AUIA]
99004
98931
-
Pro
TGG
[ENA]
¡û
>W131060655
ANHZ02000017
Actinomycetota
Kocuria palustris PEL [ANHZ]
119249
119322
+
Pro
TGG
[ENA]
¡û
>W141279372
JAGG01000001
Actinomycetota
Microbacterium sp. KROCY2 [JAGG]
2301134
2301061
-
Pro
TGG
[ENA]
¡û
>C08005756
AP009152
Actinomycetota
Kocuria rhizophila DC2201 [AP009152]
1216987
1217060
+
Pro
TGG
[Ensembl]
¡û
>WENV183511545
OMJG01000733
[OMJG] food metagenome; Cotija cheese
6999
6926
-
Pro
TGG
[ENA]
¢þ
>WENV170601249
FUWD010163649
[FUWD] metagenome; unknown
487
412
-
Pro
TGG
[ENA]
¢þ
>WENV170606241
FUWD010635605
[FUWD] metagenome; unknown
332
407
+
Pro
TGG
[ENA]
¢þ
>WENV170618951
FUWD012993277
[FUWD] metagenome; unknown
453
378
-
Pro
TGG
[ENA]
¢þ
>WENV170618953
FUWD012993278
[FUWD] metagenome; unknown
90
15
-
Pro
TGG
[ENA]
¢þ
>C181055969
CP022039
Actinomycetota
Kocuria rhizophila FDAARGOS_302 [CP022039]
610478
610405
-
Pro
TGG
-
¡û
>C181187303
CP030039
Actinomycetota
Kocuria sp. BT304 [CP030039]
1330972
1331045
+
Pro
TGG
-
¡û
>C191144206
CP035504
Actinomycetota
Kocuria indica CE7 [CP035504]
1249392
1249465
+
Pro
TGG
-
¡û
>W141531776
JHEL01000015
Actinomycetota
Curtobacterium sp. S6 [JHEL]
489545
489472
-
Pro
TGG
[ENA]
¡û
>C191178344
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
843461
843386
-
Pro
TGG
-
¡û
>C191178383
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
818657
818582
-
Pro
TGG
-
¡û
>C191178421
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
803926
803851
-
Pro
TGG
-
¡û
>C191211013
LR134409
Actinomycetota
Kocuria rhizophila NCTC8340 [LR134409]
1603076
1603003
-
Pro
TGG
-
¡û
>W1910183616
BJNW01000011
Actinomycetota
Kocuria varians NBRC 15358 [BJNW]
57160
57233
+
Pro
TGG
[ENA]
¡û
>W1910334089
FSNK01000062
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 133 [FSNK]
483
556
+
Pro
TGG
[ENA]
¡û
>W1910442289
FWFC01000005
Actinomycetota
Kocuria massiliensis Marseille-P3598 [FWFC]
310520
310593
+
Pro
TGG
[ENA]
¡û
>W1910471652
FXBD01000017
Actinomycetota
Kocuria marina [FXBD]
36196
36269
+
Pro
TGG
[ENA]
¡û
>W1910827508
MWSL01000015
Actinomycetota
Kocuria indica DSM 25126 [MWSL]
25089
25162
+
Pro
TGG
[ENA]
¡û
>W1911114544
NOIQ01000001
Actinomycetota
Rothia koreensis JCM 15915 [NOIQ]
568750
568823
+
Pro
TGG
[ENA]
¡û
>W1911114606
NOIR01000002
Actinomycetota
Kocuria sp. 257 [NOIR]
428710
428637
-
Pro
TGG
[ENA]
¡û
>W1911114646
NOIS01000002
Actinomycetota
Kocuria sp. 36 [NOIS]
100956
101029
+
Pro
TGG
[ENA]
¡û
>W1911114688
NOIT01000007
Actinomycetota
Kocuria carniphila CCM 132 [NOIT]
99461
99534
+
Pro
TGG
[ENA]
¡û
>W1911114744
NOIU01000002
Actinomycetota
Rothia halotolerans JCM 31975 [NOIU]
709280
709207
-
Pro
TGG
[ENA]
¡û
>W1911114765
NOIV01000001
Actinomycetota
Rothia kristinae ATCC 27570 [NOIV]
426320
426393
+
Pro
TGG
[ENA]
¡û
>W1911149953
NPGE01000001
Actinomycetota
Kocuria varians 80 [NPGE]
1910705
1910632
-
Pro
TGG
[ENA]
¡û
>W1911200048
NREL01000004
Actinomycetota
Mycobacteroides abscessus subsp. abscessus A324 [NREL]
389230
389157
-
Pro
TGG
[ENA]
¡û
>W1911200107
NREM01000001
Actinomycetota
Mycobacteroides abscessus subsp. abscessus A229 [NREM]
111777
111704
-
Pro
TGG
[ENA]
¡û
>W1911243213
NSGI01000007
Actinomycetota
Kocuria sp. WRN011 [NSGI]
162809
162736
-
Pro
TGG
[ENA]
¡û
>W1911582722
PHOA01000003
Actinomycetota
Kocuria tytonicola DSM 104133 [PHOA]
16191
16118
-
Pro
TGG
[ENA]
¡û
>W1911709355
QPKL01000009
Actinomycetota
Kocuria sp. CPCC 104605 [QPKL]
56276
56203
-
Pro
TGG
[ENA]
¡û
>W1810189405
PKJA01000001
Actinomycetota
Kocuria rhizophila UMB0131 [PKJA]
1718320
1718393
+
Pro
TGG
[ENA]
¡û
>W1810197073
PNJG01000062
Actinomycetota
Kocuria tytonis 442 [PNJG]
14342
14269
-
Pro
TGG
[ENA]
¡û
>W1810200197
PNRK01000011
Actinomycetota
Kocuria rhizophila D2 [PNRK]
71783
71856
+
Pro
TGG
[ENA]
¡û
>C151025274
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
585668
585743
+
Pro
TGG
[Ensembl]
¡û
>C151095247
CP012507
Actinomycetota
Kocuria palustris MU14/1 [CP012507]
1126453
1126526
+
Pro
TGG
-
¡û
>W1511317246
JPWX01000752
Actinomycetota
Kocuria rhizophila RF [JPWX]
314
387
+
Pro
TGG
[ENA]
¡û
>W1511352698
JROM01000016
Actinomycetota
Kocuria marina SO9-6 [JROM]
515571
515498
-
Pro
TGG
[ENA]
¡û
>W1511353045
JROX01000002
Actinomycetota
Kocuria sp. ZOR0020 [JROX]
151
224
+
Pro
TGG
[ENA]
¡û
>W1511459342
JVKI01000002
Actinomycetota
Leifsonia xyli 356_LXYL [JVKI]
102918
102991
+
Pro
TGG
[ENA]
¡û
>W1511489637
JWTC01000001
Actinomycetota
Kocuria rhizophila TPW45 [JWTC]
70346
70419
+
Pro
TGG
[ENA]
¡û
>W1511681631
LFIY01000003
Actinomycetota
Kocuria rhizophila 14ASP [LFIY]
18507
18434
-
Pro
TGG
[ENA]
¡û
>W11163670
AFID01000001
Actinomycetota
Kocuria rhizophila P7-4 [AFID]
106942
107015
+
Pro
TGG
[ENA]
¡û
>WENV058313
AACY023324336
Marine microbial communities from Global Ocean Sampling (GOS)
405
480
+
Pro
TGG
[ENA]
>W1610069459
BCSM01000010
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
101526
101453
-
Pro
TGG
[ENA]
¡û
>W121070974
AJXN01000033
Actinomycetota
Kocuria atrinae C3-8 [AJXN]
17241
17168
-
Pro
TGG
[ENA]
¡û
>W1610112185
CZJR01000041
Actinomycetota
Kocuria palustris [CZJR]
205580
205507
-
Pro
TGG
[ENA]
¡û
>W1610112353
CZJU01000112
Actinomycetota
Kocuria salsicia [CZJU]
10454
10527
+
Pro
TGG
[ENA]
¡û
>W1610112431
CZJW01000034
Actinomycetota
Kocuria rhizophila [CZJW]
76784
76857
+
Pro
TGG
[ENA]
¡û
>W1610112483
CZJX01000054
Actinomycetota
Kocuria varians [CZJX]
44722
44795
+
Pro
TGG
[ENA]
¡û
>W1610590097
LDRD01000079
Actinomycetota
Rothia kristinae [LDRD]
5935
6008
+
Pro
TGG
[ENA]
¡û
>W1610590103
LDRE01000004
Actinomycetota
Rothia kristinae [LDRE]
5680
5753
+
Pro
TGG
[ENA]
¡û
>W1610590169
LDRF01000048
Actinomycetota
Rothia kristinae [LDRF]
20163
20236
+
Pro
TGG
[ENA]
¡û
>W1610590219
LDRG01000064
Actinomycetota
Rothia kristinae [LDRG]
16715
16642
-
Pro
TGG
[ENA]
¡û
>W1610590248
LDRH01000044
Actinomycetota
Rothia kristinae [LDRH]
17224
17151
-
Pro
TGG
[ENA]
¡û
>W1610590278
LDRI01000010
Actinomycetota
Rothia kristinae [LDRI]
4696
4769
+
Pro
TGG
[ENA]
¡û
>W1610590320
LDRJ01000003
Actinomycetota
Rothia kristinae [LDRJ]
16973
16900
-
Pro
TGG
[ENA]
¡û
>W1610641470
LJBJ02000010
Actinomycetota
Rothia kristinae [LJBJ]
29360
29287
-
Pro
TGG
[ENA]
¡û
>W1610851020
LQBJ01000010
Actinomycetota
Kocuria palustris [LQBJ]
351981
351908
-
Pro
TGG
[ENA]
¡û
>W1610986770
LWGZ01000646
Actinomycetota
Rothia kristinae [LWGZ]
6511
6438
-
Pro
TGG
[ENA]
¡û
>W1611041118
LZMM01000076
Actinomycetota
Kocuria sp. ICS0012 [LZMM]
22131
22204
+
Pro
TGG
[ENA]
¡û
>W1710066832
BCSM01000010
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
101526
101453
-
Pro
TGG
[ENA]
¡û
>W1710114889
CZJR01000041
Actinomycetota
Kocuria palustris [CZJR]
205580
205507
-
Pro
TGG
[ENA]
¡û
>W1710115057
CZJU01000112
Actinomycetota
Kocuria salsicia [CZJU]
10454
10527
+
Pro
TGG
[ENA]
¡û
>W1710115135
CZJW01000034
Actinomycetota
Kocuria rhizophila [CZJW]
76784
76857
+
Pro
TGG
[ENA]
¡û
>W1710115187
CZJX01000054
Actinomycetota
Kocuria varians [CZJX]
44722
44795
+
Pro
TGG
[ENA]
¡û
>W1710607476
FXAC01000015
Actinomycetota
Kocuria indica [FXAC]
25089
25162
+
Pro
TGG
[ENA]
¡û
>W1710709377
LDRD01000079
Actinomycetota
Rothia kristinae [LDRD]
5935
6008
+
Pro
TGG
[ENA]
¡û
>W1710709383
LDRE01000004
Actinomycetota
Rothia kristinae [LDRE]
5680
5753
+
Pro
TGG
[ENA]
¡û
>W1710709449
LDRF01000048
Actinomycetota
Rothia kristinae [LDRF]
20163
20236
+
Pro
TGG
[ENA]
¡û
>W1710709499
LDRG01000064
Actinomycetota
Rothia kristinae [LDRG]
16715
16642
-
Pro
TGG
[ENA]
¡û
>W1710709528
LDRH01000044
Actinomycetota
Rothia kristinae [LDRH]
17224
17151
-
Pro
TGG
[ENA]
¡û
>W1710709558
LDRI01000010
Actinomycetota
Rothia kristinae [LDRI]
4696
4769
+
Pro
TGG
[ENA]
¡û
>W1710709600
LDRJ01000003
Actinomycetota
Rothia kristinae [LDRJ]
16973
16900
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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