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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29784 (32 seq.)
>W1710853423
LLWQ01000213
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
51434
51523
+
Ser
TGA
[ENA]
¡û
>C171067787
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
2622756
2622667
-
Ser
TGA
-
¡û
>C016014
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1565680
1565769
+
Ser
TGA
[Ensembl]
¡û
>C016040
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1274493
1274404
-
Ser
TGA
[Ensembl]
¡û
>W141277312
JAEM01000021
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
67940
68029
+
Ser
TGA
[ENA]
¡û
>W141279582
JAGK01000018
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
2085
1996
-
Ser
TGA
[ENA]
¡û
>WENV183729359
PJTQ01027506
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
744
655
-
Ser
TGA
[ENA]
¢þ
>WENV183741080
PJUF01036632
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
163
252
+
Ser
TGA
[ENA]
¢þ
>PL191000043
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1565680
1565769
+
Ser
TGA
[Ensembl]
¡û
>PL191000069
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1274493
1274404
-
Ser
TGA
[Ensembl]
¡û
>C181203397
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
1688200
1688289
+
Ser
TGA
-
¡û
>W09103074
AAIT01000031
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
3244
3155
-
Ser
TGA
[ENA]
¡û
>C191134364
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
306971
307060
+
Ser
TGA
-
¡û
>C191134404
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
10465
10376
-
Ser
TGA
-
¡û
>W1810235988
PPGA01000005
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
132196
132107
-
Ser
TGA
[ENA]
¡û
>W1810750745
QOZU01000062
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
22176
22265
+
Ser
TGA
[ENA]
¡û
>W1810762339
QPML01000104
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
3276
3365
+
Ser
TGA
[ENA]
¡û
>W1810862255
QTUJ01000002
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
959863
959774
-
Ser
TGA
[ENA]
¡û
>W1810884845
QUMX01000005
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
102636
102547
-
Ser
TGA
[ENA]
¡û
>W1511348593
JRKO01000007
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
34083
34172
+
Ser
TGA
[ENA]
¡û
>W1610049837
BBFH01000340
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
71
160
+
Ser
TGA
[ENA]
¡û
>W1610081473
BDDO01000001
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
4352
4263
-
Ser
TGA
[ENA]
¡û
>W1610716547
LLWQ01000213
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
51434
51523
+
Ser
TGA
[ENA]
¡û
>W1710046236
BBFH01000340
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
71
160
+
Ser
TGA
[ENA]
¡û
>W1710080124
BDDO01000001
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
4352
4263
-
Ser
TGA
[ENA]
¡û
>W1710518473
FNEA01000019
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
85960
85871
-
Ser
TGA
[ENA]
¡û
>W1710518477
FNEA01000027
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
32780
32691
-
Ser
TGA
[ENA]
¡û
>W1710563595
FOPU01000024
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
1203
1114
-
Ser
TGA
[ENA]
¡û
>W1710571564
FOWA01000017
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
2047
1958
-
Ser
TGA
[ENA]
¡û
>W1710574694
FOYK01000019
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
21674
21763
+
Ser
TGA
[ENA]
¡û
>W1710574698
FOYK01000027
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
33806
33717
-
Ser
TGA
[ENA]
¡û
>W1710581776
FPKI01000023
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
7307
7218
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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