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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298549 (13 seq.)
>W141067334
ASAA01000005
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
171290
171214
-
Ile
GAT
[ENA]
¡û
>WENV181231579
OFEK01038481
[OFEK] activated sludge metagenome; Anaerobic digester
72
148
+
Ile
GAT
[ENA]
¢þ
>WENV170689168
LFRM01281286
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2911
2835
-
Ile
GAT
[ENA]
¢þ
>WENV170719865
LSQX01131711
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
874
950
+
Ile
GAT
[ENA]
¢þ
>C181114049
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
2631943
2631867
-
Ile
GAT
-
¡û
>C191174939
CP040093
Bacillota
Caloramator sp. E03 [CP040093]
1776110
1776186
+
Ile
GAT
-
¡û
>W1910884601
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
3581325
3581249
-
Ile
GAT
[ENA]
¡û
>SRA1030529
SRR035087.290800
454 Sequencing (SRP001808)
453
377
-
Ile
GAT
[SRA]
>C121005057
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
4516278
4516202
-
Ile
GAT
[Ensembl]
¡û
>C161076034
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
3022880
3022804
-
Ile
GAT
[Ensembl]
¡û
>C161076082
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
3135614
3135538
-
Ile
GAT
[Ensembl]
¡û
>C131011050
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
2957256
2957180
-
Ile
GAT
-
¡û
>C131011916
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
2961519
2961443
-
Ile
GAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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