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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300432 (31 seq.)
>W1711317512
MAXI01000202
Thermodesulfobacteriota
Desulfovibrio sp. S3730MH75 [MAXI]
85
10
-
Asn
GTT
[ENA]
¡û
>W131224566
AUCX01000008
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
210397
210472
+
Asn
GTT
[ENA]
¡û
>W131224567
AUCX01000008
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
211134
211209
+
Asn
GTT
[ENA]
¡û
>W131224815
AUDB01000009
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
35
110
+
Asn
GTT
[ENA]
¡û
>W131224816
AUDB01000009
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
428
503
+
Asn
GTT
[ENA]
¡û
>W131224843
AUDC01000008
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
92
17
-
Asn
GTT
[ENA]
¡û
>WENV180043169
LQAH01005441
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1307
1232
-
Asn
GTT
[ENA]
¢þ
>WENV180317293
OBKJ01101489
[OBKJ] metagenome; hydrothermal vent
102
177
+
Asn
GTT
[ENA]
¢þ
>WENV183747212
PPCM01000428
[PPCM] marine sediment metagenome; marine sediment
40534
40459
-
Asn
GTT
[ENA]
¢þ
>WENV183747213
PPCM01000428
[PPCM] marine sediment metagenome; marine sediment
39399
39324
-
Asn
GTT
[ENA]
¢þ
>WENV183747654
PPCM01013857
[PPCM] marine sediment metagenome; marine sediment
457
382
-
Asn
GTT
[ENA]
¢þ
>WENV183747712
PPCM01020468
[PPCM] marine sediment metagenome; marine sediment
729
654
-
Asn
GTT
[ENA]
¢þ
>WENV183747713
PPCM01020468
[PPCM] marine sediment metagenome; marine sediment
430
355
-
Asn
GTT
[ENA]
¢þ
>WENV170645383
JMSV01001970
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
275
200
-
Asn
GTT
[ENA]
¢þ
>WENV170645461
JMSV01006264
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
121
46
-
Asn
GTT
[ENA]
¢þ
>W09117993
ACCN01000003
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
195391
195316
-
Asn
GTT
[ENA]
¡û
>W09117994
ACCN01000003
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
194980
194905
-
Asn
GTT
[ENA]
¡û
>W09117995
ACCN01000003
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
193829
193754
-
Asn
GTT
[ENA]
¡û
>W141778979
JONL01000001
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
162871
162946
+
Asn
GTT
[ENA]
¡û
>W141778980
JONL01000001
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
163239
163314
+
Asn
GTT
[ENA]
¡û
>C09104212
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2765689
2765764
+
Asn
GTT
[Ensembl]
¡û
>C09104213
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2766100
2766175
+
Asn
GTT
[Ensembl]
¡û
>C09104214
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2767251
2767326
+
Asn
GTT
[Ensembl]
¡û
>C141011966
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
43489
43414
-
Asn
GTT
-
¡û
>C141011967
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
43096
43021
-
Asn
GTT
-
¡û
>C131018148
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
43489
43414
-
Asn
GTT
[Ensembl]
¡û
>C131018149
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
43096
43021
-
Asn
GTT
[Ensembl]
¡û
>W1710520977
FNGA01000003
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
253028
252953
-
Asn
GTT
[ENA]
¡û
>W1710520978
FNGA01000003
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
252731
252656
-
Asn
GTT
[ENA]
¡û
>W1710607120
FWZU01000001
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
325168
325093
-
Asn
GTT
[ENA]
¡û
>W1710607121
FWZU01000001
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
324875
324800
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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