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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301823 (36 seq.)
>C025630
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
150535
150611
+
Pro
TGG
-
¡û
>C025799
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
793668
793592
-
Pro
TGG
[Ensembl]
¡û
>W141082661
AUNF01000050
Thermotogota
Thermotoga sp. A7A [AUNF]
4077
4153
+
Pro
TGG
[ENA]
¡û
>WENV181407942
OGCH01000269
[OGCH] hot springs metagenome; hot springs
12711
12635
-
Pro
TGG
[ENA]
¢þ
>C08010910
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
828676
828603
-
Pro
TGG
[Ensembl]
¡û
>WENV170676157
LDZR01001264
[LDZR] terrestrial metagenome; oil reservoir sample K2
12199
12123
-
Pro
TGG
[ENA]
¢þ
>WENV170676762
LDZS01002186
[LDZS] terrestrial metagenome; oil reservoir sample K3
3696
3772
+
Pro
TGG
[ENA]
¢þ
>W09107410
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
90729
90653
-
Pro
TGG
[ENA]
¡û
>W09112241
ABXR01000030
Thermotogota
Marinitoga piezophila KA3 [ABXR]
91830
91754
-
Pro
TGG
[ENA]
¡û
>C141011541
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
795087
795011
-
Pro
TGG
-
¡û
>W1910635436
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
309216
309140
-
Pro
TGG
[ENA]
¡û
>C09110662
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
545871
545795
-
Pro
TGG
[Ensembl]
¡û
>C151004286
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
833442
833366
-
Pro
TGG
[Ensembl]
¡û
>C151004332
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
778793
778717
-
Pro
TGG
[Ensembl]
¡û
>C151030646
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
822994
822918
-
Pro
TGG
[Ensembl]
¡û
>C151074590
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
150535
150611
+
Pro
TGG
[Ensembl]
¡û
>C151076944
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
150535
150611
+
Pro
TGG
[Ensembl]
¡û
>C151076990
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
150535
150611
+
Pro
TGG
[Ensembl]
¡û
>W10105813
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
147000
147076
+
Pro
TGG
[ENA]
¡û
>C10113485
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
801177
801253
+
Pro
TGG
[Ensembl]
¡û
>W11108133
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
147000
147076
+
Pro
TGG
[ENA]
¡û
>W11180811
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
147352
147428
+
Pro
TGG
[ENA]
¡û
>W121062180
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
261244
261168
-
Pro
TGG
[ENA]
¡û
>C131012480
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
150535
150611
+
Pro
TGG
-
¡û
>W1610540356
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
223122
223046
-
Pro
TGG
[ENA]
¡û
>W1610540369
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
150051
149975
-
Pro
TGG
[ENA]
¡û
>W1610540448
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
211395
211319
-
Pro
TGG
[ENA]
¡û
>W1610540460
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
32481
32557
+
Pro
TGG
[ENA]
¡û
>W1610612903
LGFG01000016
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
12199
12123
-
Pro
TGG
[ENA]
¡û
>W1610613152
LGFM01000055
Thermotogota
Thermotoga sp. 47_83 [LGFM]
3696
3772
+
Pro
TGG
[ENA]
¡û
>W1710643377
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
223122
223046
-
Pro
TGG
[ENA]
¡û
>W1710643390
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
150051
149975
-
Pro
TGG
[ENA]
¡û
>W1710643469
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
211395
211319
-
Pro
TGG
[ENA]
¡û
>W1710643481
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
32481
32557
+
Pro
TGG
[ENA]
¡û
>W1710734185
LGFG01000016
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
12199
12123
-
Pro
TGG
[ENA]
¡û
>W1710734359
LGFM01000055
Thermotogota
Thermotoga sp. 47_83 [LGFM]
3696
3772
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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