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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302387 (32 seq.)
>W1711091085
LTBC01000001
Bacillota
Moorella mulderi DSM 14980 [LTBC]
399099
399024
-
Thr
GGT
[ENA]
¡û
>W1711352279
MDDB01000003
Bacillota
Moorella thermoacetica [MDDB]
246589
246514
-
Thr
GGT
[ENA]
¡û
>W1711352335
MDDC01000010
Bacillota
Moorella thermoacetica [MDDC]
60954
60879
-
Thr
GGT
[ENA]
¡û
>W1711352370
MDDD01000006
Bacillota
Moorella thermoacetica [MDDD]
71038
71113
+
Thr
GGT
[ENA]
¡û
>W1711352412
MDDE01000002
Bacillota
Moorella thermoacetica [MDDE]
222378
222453
+
Thr
GGT
[ENA]
¡û
>W1711428527
MIHH01000001
Bacillota
Moorella thermoacetica [MIHH]
199536
199461
-
Thr
GGT
[ENA]
¡û
>W1711428604
MIIF01000012
Bacillota
Moorella thermoacetica [MIIF]
71608
71683
+
Thr
GGT
[ENA]
¡û
>C171030447
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
630164
630239
+
Thr
GGT
-
¡û
>C171055203
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
2933230
2933155
-
Thr
GGT
-
¡û
>C171058969
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
2517628
2517553
-
Thr
GGT
-
¡û
>C014187
CP000232
Bacillota
Moorella thermoacetica [CP000232]
2586387
2586312
-
Thr
GGT
[Ensembl]
¡û
>W141229792
BARR01000023
Bacillota
Moorella thermoacetica Y72 [BARR]
104057
103982
-
Thr
GGT
[ENA]
¡û
>WENV170676009
LDZR01000003
[LDZR] terrestrial metagenome; oil reservoir sample K2
6128
6053
-
Thr
GGT
[ENA]
¢þ
>WENV170676414
LDZR01002584
[LDZR] terrestrial metagenome; oil reservoir sample K2
6054
6129
+
Thr
GGT
[ENA]
¢þ
>WENV170691605
LFRM01405471
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2649
2724
+
Thr
GGT
[ENA]
¢þ
>WENV170726101
LSQX01367712
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
78
3
-
Thr
GGT
[ENA]
¢þ
>W09100943
AADT03000027
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
582
657
+
Thr
GGT
[ENA]
¡û
>C191073445
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
2602815
2602740
-
Thr
GGT
-
¡û
>W1910180062
BJKN01000001
Bacillota
Moorella sp. E308F [BJKN]
678302
678227
-
Thr
GGT
[ENA]
¡û
>W1910180098
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
1280672
1280747
+
Thr
GGT
[ENA]
¡û
>W1810010446
BFFN01000009
Bacillota
Moorella sp. Hama-1 [BFFN]
63356
63431
+
Thr
GGT
[ENA]
¡û
>W1810367304
PVXL01000057
Bacillota
Moorella stamsii DSM 26271 [PVXL]
15071
15146
+
Thr
GGT
[ENA]
¡û
>W1810367341
PVXM01000025
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
3283
3208
-
Thr
GGT
[ENA]
¡û
>C151094373
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
2484817
2484742
-
Thr
GGT
-
¡û
>C151094424
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
2580603
2580528
-
Thr
GGT
-
¡û
>W1510100258
CELZ01000024
Bacillota
Moorella glycerini NMP [CELZ]
26537
26462
-
Thr
GGT
[ENA]
¡û
>W1511570764
LAKY01000008
Bacillota
Clostridiales bacterium PH28_bin88 [LAKY]
86218
86143
-
Thr
GGT
[ENA]
¡û
>W1610604774
LFRG01000020
Bacillota
Clostridium sp. ATCC 25772 [LFRG]
24092
24167
+
Thr
GGT
[ENA]
¡û
>W1610607090
LFTO01000234
Bacillota
Clostridiales bacterium DTU086 [LFTO]
2649
2724
+
Thr
GGT
[ENA]
¡û
>W1610925284
LTBC01000001
Bacillota
Moorella mulderi DSM 14980 [LTBC]
399099
399024
-
Thr
GGT
[ENA]
¡û
>W1710081762
BDGJ01000007
Bacillota
Calderihabitans maritimus [BDGJ]
506
431
-
Thr
GGT
[ENA]
¡û
>W1710728377
LFTO01000234
Bacillota
Clostridiales bacterium DTU086 [LFTO]
2649
2724
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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