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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303627 (77 seq.)
>W1710808909
LKDZ01000004
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
94925
94850
-
Lys
TTT
[ENA]
¡û
>W1710821664
LKTU01000073
Betaproteobacteria
Variovorax paradoxus [LKTU]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1710821701
LKTV01000069
Betaproteobacteria
Variovorax paradoxus [LKTV]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1710821797
LKTX01000063
Betaproteobacteria
Variovorax paradoxus [LKTX]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1710821873
LKTY01000237
Betaproteobacteria
Variovorax paradoxus [LKTY]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1710862507
LMEK01000027
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
18429
18354
-
Lys
TTT
[ENA]
¡û
>W1710863085
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
1274090
1274165
+
Lys
TTT
[ENA]
¡û
>W1710868703
LMJH01000001
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
1539532
1539457
-
Lys
TTT
[ENA]
¡û
>W1710872593
LMMC01000007
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
27894
27969
+
Lys
TTT
[ENA]
¡û
>W131050702
AMXA01000004
Betaproteobacteria
Thauera sp. 28 [AMXA]
27044
26969
-
Lys
TTT
[ENA]
¡û
>W1711123819
LUJJ01000012
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
112059
111984
-
Lys
TTT
[ENA]
¡û
>W131226938
AUET01000008
Betaproteobacteria
Comamonadaceae bacterium URHA0028 [AUET]
407838
407763
-
Lys
TTT
[ENA]
¡û
>W1711386503
MEFM01000022
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
80832
80757
-
Lys
TTT
[ENA]
¡û
>W1711386870
MEFX01000180
Betaproteobacteria
Lautropia sp. SCN 66-9 [MEFX]
4325
4400
+
Lys
TTT
[ENA]
¡û
>W131174637
ARIP01000062
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
139134
139059
-
Lys
TTT
[ENA]
¡û
>WENV180022973
FTHB01000110
[FTHB] metagenome; soil
28549
28474
-
Lys
TTT
[ENA]
¢þ
>WENV180023000
FTHB01000506
[FTHB] metagenome; soil
9638
9713
+
Lys
TTT
[ENA]
¢þ
>WENV180024964
FTIL01004206
[FTIL] metagenome; soil
1579
1504
-
Lys
TTT
[ENA]
¢þ
>WENV180111461
OAPN01086293
[OAPN] marine metagenome; 2011
129
54
-
Lys
TTT
[ENA]
¢þ
>WENV181227188
OFDN01003006
[OFDN] hot springs metagenome; Water
6935
6860
-
Lys
TTT
[ENA]
¢þ
>WENV181401247
OFSF01092025
[OFSF] wastewater metagenome; Exp Tend VB 100WW
50
125
+
Lys
TTT
[ENA]
¢þ
>WENV181414830
OGCL01001563
[OGCL] hot springs metagenome; Hot spring water
435
360
-
Lys
TTT
[ENA]
¢þ
>W141170142
AXXF01000012
Betaproteobacteria
Variovorax sp. JGI 0001014-I04 [AXXF]
817
742
-
Lys
TTT
[ENA]
¡û
>WENV181857748
OGWO01039779
[OGWO] freshwater metagenome; freshwater
535
460
-
Lys
TTT
[ENA]
¢þ
>WENV183735590
PJUB01000108
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
10234
10159
-
Lys
TTT
[ENA]
¢þ
>WENV183736285
PJUC01000415
[PJUC] soil metagenome; Soil enriched on filter paper
14093
14168
+
Lys
TTT
[ENA]
¢þ
>WENV183742020
PJUH01000071
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
54996
55071
+
Lys
TTT
[ENA]
¢þ
>WENV170390714
CEUA01145857
[CEUA] marine metagenome genome assembly TARA_132_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
492
417
-
Lys
TTT
[ENA]
¢þ
>WENV170559463
CXWL01124558
[CXWL] groundwater metagenome; biofilm material
8172
8097
-
Lys
TTT
[ENA]
¢þ
>WENV170654152
JRYK01016387
[JRYK] activated sludge metagenome; activated biomass of a wastewaster treatment plant treating hydrocarbon contaminated
1289
1364
+
Lys
TTT
[ENA]
¢þ
>WENV170654503
JRYL01000134
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
20090
20015
-
Lys
TTT
[ENA]
¢þ
>WENV170654762
JRYL01014180
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
3463
3538
+
Lys
TTT
[ENA]
¢þ
>WENV171003615
NNBU01000782
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
22395
22470
+
Lys
TTT
[ENA]
¢þ
>WENV171003785
NNBV01000771
[NNBV] plant metagenome; symbiotic tissue sample KVS11
44562
44637
+
Lys
TTT
[ENA]
¢þ
>C181159413
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
1333956
1333881
-
Lys
TTT
-
¡û
>C191019169
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
4471471
4471546
+
Lys
TTT
-
¡û
>W1910179199
BJHU01000030
Betaproteobacteria
Acidovorax sp. NB1 [BJHU]
202469
202394
-
Lys
TTT
[ENA]
¡û
>C09111101
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
2839014
2839089
+
Lys
TTT
[Ensembl]
¡û
>W1910792828
MRCN01000008
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
199472
199397
-
Lys
TTT
[ENA]
¡û
>W1911496712
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
4122688
4122613
-
Lys
TTT
[ENA]
¡û
>W1911775327
QXMN01000027
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
11985
11910
-
Lys
TTT
[ENA]
¡û
>W1810192724
PKMT01000003
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
501574
501499
-
Lys
TTT
[ENA]
¡û
>W1810577500
QEOH01000001
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
588625
588700
+
Lys
TTT
[ENA]
¡û
>W1810672516
QJTM01000001
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
484938
485013
+
Lys
TTT
[ENA]
¡û
>W1810676084
QKLT01000001
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
484938
485013
+
Lys
TTT
[ENA]
¡û
>W1810682453
QKUE01000001
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
484938
485013
+
Lys
TTT
[ENA]
¡û
>W1810763119
QQAV01000015
Betaproteobacteria
Pseudacidovorax intermedius DSM 21352 [QQAV]
120128
120203
+
Lys
TTT
[ENA]
¡û
>ENV09000665
ABSP01011652
Freshwater sediment metagenome lwMethane_C1
297
222
-
Lys
TTT
[ENA]
¡û
>W1510766091
JANU01000031
Betaproteobacteria
Caenimonas sp. SL110 [JANU]
117304
117229
-
Lys
TTT
[ENA]
¡û
>C11123579
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
2933129
2933204
+
Lys
TTT
[Ensembl]
¡û
>W1511508929
JXQQ01000033
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
87102
87177
+
Lys
TTT
[ENA]
¡û
>W1511555003
JZWI01000018
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
16171
16246
+
Lys
TTT
[ENA]
¡û
>W11156604
AFBH01000023
Betaproteobacteria
Acidovorax radicis N35v [AFBH]
260688
260763
+
Lys
TTT
[ENA]
¡û
>W1610072230
BCUT01000008
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
135571
135496
-
Lys
TTT
[ENA]
¡û
>W1610072234
BCUU01000001
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
76430
76355
-
Lys
TTT
[ENA]
¡û
>C131000307
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
4753054
4753129
+
Lys
TTT
[Ensembl]
¡û
>W1610685626
LKTU01000073
Betaproteobacteria
Variovorax paradoxus [LKTU]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1610685663
LKTV01000069
Betaproteobacteria
Variovorax paradoxus [LKTV]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1610685759
LKTX01000063
Betaproteobacteria
Variovorax paradoxus [LKTX]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1610685835
LKTY01000237
Betaproteobacteria
Variovorax paradoxus [LKTY]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1610724853
LMEK01000027
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
18429
18354
-
Lys
TTT
[ENA]
¡û
>W1610725431
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
1274090
1274165
+
Lys
TTT
[ENA]
¡û
>W1610731049
LMJH01000001
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
1539532
1539457
-
Lys
TTT
[ENA]
¡û
>W1610734939
LMMC01000007
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
27894
27969
+
Lys
TTT
[ENA]
¡û
>W1710069432
BCUT01000008
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
135571
135496
-
Lys
TTT
[ENA]
¡û
>W1710069436
BCUU01000001
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
76430
76355
-
Lys
TTT
[ENA]
¡û
>W1710506174
FMUJ01000001
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
1274207
1274282
+
Lys
TTT
[ENA]
¡û
>W1710517964
FNDR01000014
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
114081
114006
-
Lys
TTT
[ENA]
¡û
>W1710531356
FNPM01000002
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
526344
526269
-
Lys
TTT
[ENA]
¡û
>W1710534013
FNRO01000001
Betaproteobacteria
Variovorax sp. YR216 [FNRO]
400883
400808
-
Lys
TTT
[ENA]
¡û
>W1710539556
FNVM01000006
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
257339
257264
-
Lys
TTT
[ENA]
¡û
>W1710542706
FNZJ01000003
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
234572
234647
+
Lys
TTT
[ENA]
¡û
>W1710545280
FOBJ01000001
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
517230
517155
-
Lys
TTT
[ENA]
¡û
>W1710558145
FOLP01000003
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
234518
234593
+
Lys
TTT
[ENA]
¡û
>W1710562248
FOOV01000003
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
257341
257266
-
Lys
TTT
[ENA]
¡û
>W1710571856
FOWG01000002
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
251644
251719
+
Lys
TTT
[ENA]
¡û
>W1710572109
FOWL01000001
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
541214
541139
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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