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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303842 (111 seq.)
>W1710785567
LJHZ01000003
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
27038
26963
-
Val
TAC
[ENA]
¡û
>W1710797293
LJSX01000046
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
1790
1715
-
Val
TAC
[ENA]
¡û
>W1710856864
LLZR01000020
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
120060
119985
-
Val
TAC
[ENA]
¡û
>W1710866201
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
316941
317016
+
Val
TAC
[ENA]
¡û
>W1711051685
LRSE01000002
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
249754
249829
+
Val
TAC
[ENA]
¡û
>W1711073921
LSJB01000101
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
1892
1967
+
Val
TAC
[ENA]
¡û
>W1711074657
LSJS01000268
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
1892
1967
+
Val
TAC
[ENA]
¡û
>W1711262675
LYXZ01000056
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
261923
261998
+
Val
TAC
[ENA]
¡û
>W1711292829
LZYB01000002
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
41853
41778
-
Val
TAC
[ENA]
¡û
>W1711501486
MKRR01000150
Alphaproteobacteria
Sphingomonas sp. 66-10 [MKRR]
1759
1684
-
Val
TAC
[ENA]
¡û
>W1711501947
MKSE01000017
Alphaproteobacteria
Altererythrobacter sp. 66-12 [MKSE]
157600
157527
-
Val
TAC
[ENA]
¡û
>W1711502558
MKSU01000027
Alphaproteobacteria
Sphingomonas sp. 67-36 [MKSU]
1895
1820
-
Val
TAC
[ENA]
¡û
>W1711766382
MUYI01000001
Alphaproteobacteria
Erythrobacter dokdonensis [MUYI]
2699028
2699103
+
Val
TAC
[ENA]
¡û
>W131058779
ANFX01000022
Alphaproteobacteria
Porphyrobacter sp. AAP82 [ANFX]
37600
37527
-
Val
TAC
[ENA]
¡û
>W131186318
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
4033147
4033072
-
Val
TAC
[ENA]
¡û
>W131218793
ATYA01000002
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
1383046
1382971
-
Val
TAC
[ENA]
¡û
>W131222121
AUBA01000004
Alphaproteobacteria
Novosphingobium acidiphilum DSM 19966 [AUBA]
117860
117785
-
Val
TAC
[ENA]
¡û
>C171075872
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
1040356
1040431
+
Val
TAC
-
¡û
>w015403
AAPC01000004
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
276402
276479
+
Val
TAC
[ENA]
¡û
>WENV180016936
FSWC01000084
[FSWC] metagenome; soil
325
400
+
Val
TAC
[ENA]
¢þ
>WENV180263516
OBEQ011482695
[OBEQ] groundwater metagenome; groundwater
188
116
-
Val
TAC
[ENA]
¢þ
>WENV181184409
OEKC01000085
[OEKC] metagenome; 1998
4837
4762
-
Val
TAC
[ENA]
¢þ
>WENV181223013
OFDC01001149
[OFDC] hot springs metagenome; Water
4349
4424
+
Val
TAC
[ENA]
¢þ
>WENV181223092
OFDC01001896
[OFDC] hot springs metagenome; Water
2870
2797
-
Val
TAC
[ENA]
¢þ
>WENV181307975
OFIS01000069
[OFIS] sludge metagenome; sludge
92442
92517
+
Val
TAC
[ENA]
¢þ
>WENV181308326
OFIS01004106
[OFIS] sludge metagenome; sludge
825
750
-
Val
TAC
[ENA]
¢þ
>WENV181308388
OFIS01010489
[OFIS] sludge metagenome; sludge
1298
1373
+
Val
TAC
[ENA]
¢þ
>WENV181416885
OGCL01173339
[OGCL] hot springs metagenome; Hot spring water
294
219
-
Val
TAC
[ENA]
¢þ
>W141151382
AXBA01000016
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
84402
84327
-
Val
TAC
[ENA]
¡û
>W08006146
ABIP01000013
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
153798
153873
+
Val
TAC
[ENA]
¡û
>C08007352
CP000774
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [CP000774]
3444384
3444312
-
Val
TAC
[Ensembl]
¡û
>C08011447
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
4021550
4021625
+
Val
TAC
[Ensembl]
¡û
>W141278835
JAFV01000001
Alphaproteobacteria
Methylopila sp. 73B [JAFV]
1363206
1363131
-
Val
TAC
[ENA]
¡û
>WENV183692696
ORMF011961819
[ORMF] groundwater metagenome; groundwater
840
765
-
Val
TAC
[ENA]
¢þ
>WENV183748644
PPFU01063469
[PPFU] hypolithon metagenome; Antarctic Hypolithon
262
187
-
Val
TAC
[ENA]
¢þ
>WENV170003047
AGTN01210038
[AGTN] bioreactor metagenome; poplar biomass
432
357
-
Val
TAC
[ENA]
¢þ
>WENV170003434
AGTN01331980
[AGTN] bioreactor metagenome; poplar biomass
275
200
-
Val
TAC
[ENA]
¢þ
>WENV170003965
AGTN01517635
[AGTN] bioreactor metagenome; poplar biomass
266
191
-
Val
TAC
[ENA]
¢þ
>WENV170016215
AZIJ01017211
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
8579
8654
+
Val
TAC
[ENA]
¢þ
>WENV170136879
CENV01088103
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
12956
13031
+
Val
TAC
[ENA]
¢þ
>WENV170278050
CERQ01048634
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
129
204
+
Val
TAC
[ENA]
¢þ
>WENV170487498
CEVO01063643
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
882
957
+
Val
TAC
[ENA]
¢þ
>WENV170550901
CXWF01046648
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
258
183
-
Val
TAC
[ENA]
¢þ
>WENV170682473
LFIK01000165
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
36743
36818
+
Val
TAC
[ENA]
¢þ
>WENV170683278
LFIK01008230
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
6794
6719
-
Val
TAC
[ENA]
¢þ
>W09100316
AAAV03000003
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
69352
69427
+
Val
TAC
[ENA]
¡û
>WENV021551
AACY020579530
Marine microbial communities from Global Ocean Sampling (GOS)
157
82
-
Val
TAC
[ENA]
>C181063195
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
3312949
3313024
+
Val
TAC
-
¡û
>C181179102
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
1951184
1951259
+
Val
TAC
-
¡û
>C181180152
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
2169152
2169077
-
Val
TAC
-
¡û
>C191155753
CP037948
Alphaproteobacteria
Qipengyuania sediminis CGMCC 1.12928 [CP037948]
1166611
1166686
+
Val
TAC
-
¡û
>C191170956
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
1601243
1601318
+
Val
TAC
-
¡û
>C191171232
CP039704
Alphaproteobacteria
Hankyongella ginsenosidimutans W1-2-3 [CP039704]
2425130
2425205
+
Val
TAC
-
¡û
>C191220347
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
2210693
2210618
-
Val
TAC
-
¡û
>C191221050
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
111809
111884
+
Val
TAC
-
¡û
>W141733760
JNLC01000016
Alphaproteobacteria
Bosea sp. 117 [JNLC]
72872
72797
-
Val
TAC
[ENA]
¡û
>W1910006635
BAUX01000015
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
72757
72682
-
Val
TAC
[ENA]
¡û
>W1910727961
MGVU01000388
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
2722
2647
-
Val
TAC
[ENA]
¡û
>W1810120384
PHSO01000004
Alphaproteobacteria
Tsuneonella flava MS1-4 [PHSO]
575524
575599
+
Val
TAC
[ENA]
¡û
>W1810325518
PUEJ01000010
Alphaproteobacteria
Labrys okinawensis RP1T [PUEJ]
145067
144992
-
Val
TAC
[ENA]
¡û
>W1810463752
PZZU01000024
Alphaproteobacteria
Novosphingobium sp. GV064 [PZZU]
39525
39450
-
Val
TAC
[ENA]
¡û
>W1810477343
QAOS01000024
Alphaproteobacteria
Novosphingobium sp. GV055 [QAOS]
39525
39450
-
Val
TAC
[ENA]
¡û
>W1810513897
QBUA01000024
Alphaproteobacteria
Novosphingobium sp. GV061 [QBUA]
39525
39450
-
Val
TAC
[ENA]
¡û
>W1810514319
QBUI01000024
Alphaproteobacteria
Novosphingobium sp. GV027 [QBUI]
39525
39450
-
Val
TAC
[ENA]
¡û
>W1810576586
QENQ01000001
Alphaproteobacteria
Sphingomonas pokkalii L3B27 [QENQ]
1370213
1370288
+
Val
TAC
[ENA]
¡û
>W1810594377
QFZL01000004
Alphaproteobacteria
Sphingosinithalassobacter portus FM6 [QFZL]
138996
139071
+
Val
TAC
[ENA]
¡û
>W1810597592
QGHL01000004
Alphaproteobacteria
Novosphingobium meiothermophilum SYSU G00007 [QGHL]
136729
136804
+
Val
TAC
[ENA]
¡û
>W1810676904
QKMI01000008
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
79488
79413
-
Val
TAC
[ENA]
¡û
>W1810763433
QQBB01000008
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
12831
12906
+
Val
TAC
[ENA]
¡û
>W1810783295
QQTO01000007
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
121061
121136
+
Val
TAC
[ENA]
¡û
>W1810783349
QQTP01000007
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
121061
121136
+
Val
TAC
[ENA]
¡û
>W1810858405
QTJP01000001
Alphaproteobacteria
Sphingomonas crusticola MIMD3 [QTJP]
1526963
1526888
-
Val
TAC
[ENA]
¡û
>W1810887321
QUOY01000001
Alphaproteobacteria
Methylovirgula sp. 4M-Z18 [QUOY]
575434
575509
+
Val
TAC
[ENA]
¡û
>C151073209
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
3841529
3841454
-
Val
TAC
[Ensembl]
¡û
>W10110080
ADBQ01000006
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
45451
45526
+
Val
TAC
[ENA]
¡û
>C10112214
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
2310603
2310528
-
Val
TAC
[Ensembl]
¡û
>W11112517
ADBQ01000006
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
45451
45526
+
Val
TAC
[ENA]
¡û
>W1511398040
JTDI01000007
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
10058
9983
-
Val
TAC
[ENA]
¡û
>W1511563292
LABY01000050
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
340
415
+
Val
TAC
[ENA]
¡û
>W1511563375
LABZ01000168
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
31559
31634
+
Val
TAC
[ENA]
¡û
>W1511590525
LBHB01000001
Alphaproteobacteria
Aurantiacibacter luteus KA37 [LBHB]
111768
111693
-
Val
TAC
[ENA]
¡û
>W11151091
AEWJ01000064
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
2602
2527
-
Val
TAC
[ENA]
¡û
>W1610076577
BCYV01000023
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
39405
39330
-
Val
TAC
[ENA]
¡û
>W1610076709
BCYY01000031
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
10884
10809
-
Val
TAC
[ENA]
¡û
>W1610516213
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1577193
1577118
-
Val
TAC
[ENA]
¡û
>W1610550630
JXTJ01000008
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
715327
715252
-
Val
TAC
[ENA]
¡û
>W1610590475
LDRM01000009
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
14650
14575
-
Val
TAC
[ENA]
¡û
>W1610590543
LDRN01000015
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
39333
39408
+
Val
TAC
[ENA]
¡û
>W1610649373
LJHZ01000003
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
27038
26963
-
Val
TAC
[ENA]
¡û
>W1610661250
LJSX01000046
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
1790
1715
-
Val
TAC
[ENA]
¡û
>W1610719245
LLZR01000020
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
120060
119985
-
Val
TAC
[ENA]
¡û
>W1610728547
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
316941
317016
+
Val
TAC
[ENA]
¡û
>W1610892814
LRSE01000002
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
249754
249829
+
Val
TAC
[ENA]
¡û
>W1610913226
LSJB01000101
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
1892
1967
+
Val
TAC
[ENA]
¡û
>W1610913962
LSJS01000268
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
1892
1967
+
Val
TAC
[ENA]
¡û
>W1611024542
LYXZ01000056
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
261923
261998
+
Val
TAC
[ENA]
¡û
>W1611050045
LZYB01000002
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
41853
41778
-
Val
TAC
[ENA]
¡û
>W1710064199
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
4947201
4947126
-
Val
TAC
[ENA]
¡û
>W1710074266
BCYV01000023
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
39405
39330
-
Val
TAC
[ENA]
¡û
>W1710074398
BCYY01000031
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
10884
10809
-
Val
TAC
[ENA]
¡û
>W1710501504
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1577193
1577118
-
Val
TAC
[ENA]
¡û
>W1710505286
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
494302
494377
+
Val
TAC
[ENA]
¡û
>W1710508004
FMVR01000010
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
69027
69102
+
Val
TAC
[ENA]
¡û
>W1710538935
FNUY01000002
Alphaproteobacteria
Bosea lathyri [FNUY]
532322
532397
+
Val
TAC
[ENA]
¡û
>W1710548826
FOEB01000009
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
188089
188164
+
Val
TAC
[ENA]
¡û
>W1710566294
FORV01000006
Alphaproteobacteria
Sphingomonas sp. NFR04 [FORV]
23272
23347
+
Val
TAC
[ENA]
¡û
>W1710567159
FOSN01000002
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
333461
333536
+
Val
TAC
[ENA]
¡û
>W1710598476
FTOA01000001
Alphaproteobacteria
Insolitispirillum peregrinum [FTOA]
389333
389408
+
Val
TAC
[ENA]
¡û
>W1710660465
JXTJ01000008
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
715327
715252
-
Val
TAC
[ENA]
¡û
>W1710709755
LDRM01000009
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
14650
14575
-
Val
TAC
[ENA]
¡û
>W1710709823
LDRN01000015
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
39333
39408
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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