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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305807 (49 seq.)
>W1711751215
MUNO01000026
Betaproteobacteria
Polaromonas sp. A23 [MUNO]
164601
164677
+
Pro
TGG
[ENA]
¡û
>C017300
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
2031833
2031909
+
Pro
TGG
[Ensembl]
¡û
>C017355
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
3136227
3136151
-
Pro
TGG
[Ensembl]
¡û
>WENV180033741
FTKL01068922
[FTKL] metagenome; soil
879
803
-
Pro
TGG
[ENA]
¡û
>WENV180285405
OBID01393544
[OBID] metagenome; sludge
258
182
-
Pro
TGG
[ENA]
¡û
>WENV181315156
OFJN01001951
[OFJN] marine metagenome; sea ice
154
230
+
Pro
TGG
[ENA]
¡û
>WENV181377387
OFRA01008446
[OFRA] wastewater metagenome; Lake Maggiore Verbania
745
821
+
Pro
TGG
[ENA]
¡û
>WENV181400922
OFSF01033001
[OFSF] wastewater metagenome; Exp Tend VB 100WW
754
678
-
Pro
TGG
[ENA]
¡û
>WENV181835457
OGVI01000873
[OGVI] freshwater metagenome; freshwater
829
905
+
Pro
TGG
[ENA]
¡û
>WENV181838402
OGVN01000158
[OGVN] freshwater metagenome; freshwater
3323
3247
-
Pro
TGG
[ENA]
¡û
>C08007669
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
3136227
3136154
-
Pro
TGG
[Ensembl]
¡û
>W141266014
CCJP01000005
Betaproteobacteria
Polaromonas sp. CG9_12 CJ2 [CCJP]
54086
54010
-
Pro
TGG
[ENA]
¡û
>WENV170600060
FUWD010104591
[FUWD] metagenome; unknown
310
234
-
Pro
TGG
[ENA]
¡û
>WENV170617966
FUWD012945336
[FUWD] metagenome; unknown
539
463
-
Pro
TGG
[ENA]
¡û
>WENV170714939
LNFM01117365
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1182
1106
-
Pro
TGG
[ENA]
¡û
>C191073185
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
3721660
3721584
-
Pro
TGG
-
¡û
>W09101599
AAFQ02000001
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
815322
815246
-
Pro
TGG
[ENA]
¡û
>W09104865
AANM01000006
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
81076
81000
-
Pro
TGG
[ENA]
¡û
>W141695465
JMDZ01000004
Betaproteobacteria
Polaromonas glacialis [JMDZ]
65740
65816
+
Pro
TGG
[ENA]
¡û
>W1910859506
NBZV01000019
Betaproteobacteria
Polaromonas sp. AER18D-145 [NBZV]
43837
43913
+
Pro
TGG
[ENA]
¡û
>W1910859525
NBZW01000001
Betaproteobacteria
Polaromonas sp. AET17H-212 [NBZW]
94084
94008
-
Pro
TGG
[ENA]
¡û
>W1910942186
NJGG01000002
Betaproteobacteria
Polynucleobacter cosmopolitanus MWH-MoIso2 [NJGG]
297185
297109
-
Pro
TGG
[ENA]
¡û
>SRA1002907
SRR002326.94064
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
106
182
+
Pro
TGG
[SRA]
>SRA1003715
SRR002327.142278
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
164
240
+
Pro
TGG
[SRA]
>SRA1036663
SRR035089.575345
454 Sequencing (SRP001810)
167
91
-
Pro
TGG
[SRA]
>W2010936736
NBZV01000019
Betaproteobacteria
Polaromonas sp. AER18D-145 [NBZV]
43837
43913
+
Pro
TGG
[ENA]
¡û
>W2010936755
NBZW01000001
Betaproteobacteria
Polaromonas sp. AET17H-212 [NBZW]
94084
94008
-
Pro
TGG
[ENA]
¡û
>W2010985009
NJGG01000002
Betaproteobacteria
Polynucleobacter cosmopolitanus MWH-MoIso2 [NJGG]
297185
297109
-
Pro
TGG
[ENA]
¡û
>W2110026311
BMIG01000009
Betaproteobacteria
Polaromonas eurypsychrophila CGMCC 1.15322 [BMIG]
161761
161685
-
Pro
TGG
[ENA]
¡û
>W2110272495
JACVOT010000001
Betaproteobacteria
Polynucleobacter sp. AM-26B4 [JACVOT]
1340491
1340567
+
Pro
TGG
[ENA]
¡û
>W2110363565
JADOVE010000020
Betaproteobacteria
Polaromonas sp. CG_9.11 [JADOVE]
73944
74020
+
Pro
TGG
[ENA]
¡û
>W2110363597
JADOVF010000014
Betaproteobacteria
Polaromonas sp. CG_9.2 [JADOVF]
68838
68914
+
Pro
TGG
[ENA]
¡û
>W2110363638
JADOVG010000014
Betaproteobacteria
Polaromonas sp. CG_9.7 [JADOVG]
68838
68914
+
Pro
TGG
[ENA]
¡û
>W2110592195
JAHCDN010000001
Betaproteobacteria
Variovorax sp. PCZ-1 [JAHCDN]
1414271
1414347
+
Pro
TGG
[ENA]
¡û
>C201172327
CP046023
Betaproteobacteria
Polaromonas sp. Pch-P [CP046023]
2780745
2780821
+
Pro
TGG
-
¡û
>C211144868
CP061294
Betaproteobacteria
Polynucleobacter sp. MWH-Spelu-300-X4 [CP061294]
1214219
1214143
-
Pro
TGG
-
¡û
>C211145052
CP061299
Betaproteobacteria
Polynucleobacter sp. MWH-CaK5 [CP061299]
1211453
1211377
-
Pro
TGG
-
¡û
>C231247355
CP087963
Betaproteobacteria
Polaromonas sp. P1(28)-13 [CP087963]
5921939
5922015
+
Pro
TGG
-
¡û
>C231247404
CP087964
Betaproteobacteria
Polaromonas sp. P1(28)-8 [CP087964]
3289418
3289342
-
Pro
TGG
-
¡û
>C231247430
CP087965
Betaproteobacteria
Polaromonas sp. P2-4 [CP087965]
5589754
5589830
+
Pro
TGG
-
¡û
>C231247470
CP087966
Betaproteobacteria
Polaromonas sp. P1-6 [CP087966]
5830715
5830791
+
Pro
TGG
-
¡û
>WENV057814
AACY023307498
Marine microbial communities from Global Ocean Sampling (GOS)
1300
1222
-
Pro
TGG
[ENA]
>W121084929
AKIV01000100
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
15737
15813
+
Pro
TGG
[ENA]
¡û
>W1610076200
BCYO01000005
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
123067
123143
+
Pro
TGG
[ENA]
¡û
>W1710074015
BCYO01000005
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
123067
123143
+
Pro
TGG
[ENA]
¡û
>W1710523379
FNHX01000001
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
138748
138824
+
Pro
TGG
[ENA]
¡û
>W1710557419
FOKZ01000028
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
9056
9132
+
Pro
TGG
[ENA]
¡û
>W1710578301
FPBM01000002
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
258766
258690
-
Pro
TGG
[ENA]
¡û
>W1710610216
FYEX01000002
Betaproteobacteria
Polynucleobacter victoriensis MWH-VicM1 [FYEX]
261464
261388
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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