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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30652 (51 seq.)
>W1711206649
LXEI01000001
Bacteroidota
Tamlana agarivorans [LXEI]
558706
558618
-
Ser
GGA
[ENA]
¡û
>W1711359982
MDJD01000007
Bacteroidota
Flavivirga aquatica SK-16 [MDJD]
177825
177737
-
Ser
GGA
[ENA]
¡û
>W1711622834
MPGM01000001
Bacteroidota
Flavobacteriaceae bacterium A100 [MPGM]
643485
643575
+
Ser
GGA
[ENA]
¡û
>W131211422
ATMR01000098
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
106529
106441
-
Ser
GGA
[ENA]
¡û
>C171092616
CP019389
Bacteroidota
Seonamhaeicola sp. S2-3 [CP019389]
1745778
1745866
+
Ser
GGA
-
¡û
>W141079144
ATLG01000025
Bacteroidota
Cellulophaga baltica 4 [ATLG]
394951
394863
-
Ser
GGA
[ENA]
¡û
>W141079183
ATLH01000029
Bacteroidota
Cellulophaga baltica 13 [ATLH]
284218
284130
-
Ser
GGA
[ENA]
¡û
>W141079218
ATLI01000026
Bacteroidota
Cellulophaga baltica 18 [ATLI]
288559
288471
-
Ser
GGA
[ENA]
¡û
>W141079250
ATLJ01000034
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
222685
222597
-
Ser
GGA
[ENA]
¡û
>WENV182557571
OJDK01000365
[OJDK] seawater metagenome; Sea water
17150
17062
-
Ser
GGA
[ENA]
¢þ
>WENV182587404
OJHM01003527
[OJHM] seawater metagenome; Sea water
775
863
+
Ser
GGA
[ENA]
¢þ
>WENV182588085
OJHO01002870
[OJHO] seawater metagenome; Sea water
2680
2768
+
Ser
GGA
[ENA]
¢þ
>WENV183057037
OLHK01000846
[OLHK] seawater metagenome; Sea water
4378
4290
-
Ser
GGA
[ENA]
¢þ
>WENV170014850
AZIC01000951
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
117
207
+
Ser
GGA
[ENA]
¢þ
>WENV170218610
CEPZ01015035
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
62848
62758
-
Ser
GGA
[ENA]
¢þ
>WENV170228654
CEQG01029328
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
676
588
-
Ser
GGA
[ENA]
¢þ
>WENV170249909
CEQS01050562
[CEQS] marine metagenome genome assembly TARA_072_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
253
163
-
Ser
GGA
[ENA]
¢þ
>WENV170300405
CESG01122411
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
336
246
-
Ser
GGA
[ENA]
¢þ
>WENV170621180
FUWD013051023
[FUWD] metagenome; unknown
1685
1775
+
Ser
GGA
[ENA]
¢þ
>WENV170629347
FUWD013267608
[FUWD] metagenome; unknown
1685
1775
+
Ser
GGA
[ENA]
¢þ
>W1810351312
PVEO01000001
Bacteroidota
Jejuia pallidilutea DSM 21165 [PVEO]
787835
787747
-
Ser
GGA
[ENA]
¡û
>W1810591988
QFWS01000010
Bacteroidota
Flavobacteriaceae bacterium LYZ1037 LYZ1037 [QFWS]
42642
42554
-
Ser
GGA
[ENA]
¡û
>W1810596529
QGGP01000001
Bacteroidota
Xanthomarina spongicola DSM 22637 [QGGP]
602809
602897
+
Ser
GGA
[ENA]
¡û
>W1810720949
QNRP01000001
Bacteroidota
Oceanihabitans sediminis DSM 28133 [QNRP]
361449
361361
-
Ser
GGA
[ENA]
¡û
>W1810757321
QPHL01000012
Bacteroidota
Winogradskyella sp. KYW1333 [QPHL]
91023
90935
-
Ser
GGA
[ENA]
¡û
>W1810758186
QPIG01000001
Bacteroidota
Oceanihabitans sediminis S9-10 [QPIG]
361481
361393
-
Ser
GGA
[ENA]
¡û
>W1810787694
QRDX01000001
Bacteroidota
Seonamhaeicola aphaedonensis CECT 8487 [QRDX]
642098
642010
-
Ser
GGA
[ENA]
¡û
>W1810788348
QREI01000005
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
98907
98819
-
Ser
GGA
[ENA]
¡û
>W1810885406
QUNH01000001
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
279525
279437
-
Ser
GGA
[ENA]
¡û
>C151061189
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
1736025
1736113
+
Ser
GGA
[Ensembl]
¡û
>C151062864
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
1756842
1756930
+
Ser
GGA
[Ensembl]
¡û
>W1510012877
BBNQ01000001
Bacteroidota
Algibacter lectus JCM 19300 [BBNQ]
361512
361600
+
Ser
GGA
[ENA]
¡û
>W1510012919
BBNR01000004
Bacteroidota
Jejuia pallidilutea JCM 19301 [BBNR]
219432
219344
-
Ser
GGA
[ENA]
¡û
>W1510012945
BBNS01000002
Bacteroidota
Jejuia pallidilutea JCM 19302 [BBNS]
219290
219202
-
Ser
GGA
[ENA]
¡û
>W1510013008
BBNU01000004
Bacteroidota
Algibacter lectus JCM 19274 [BBNU]
117243
117331
+
Ser
GGA
[ENA]
¡û
>W1510013032
BBNY01000001
Bacteroidota
Jejuia pallidilutea JCM 19538 [BBNY]
22225
22313
+
Ser
GGA
[ENA]
¡û
>C11104707
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
2315897
2315987
+
Ser
GGA
[Ensembl]
¡û
>W1511320917
JQCT01000001
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
282469
282381
-
Ser
GGA
[ENA]
¡û
>W1511398886
JTDV01000013
Bacteroidota
Tamlana nanhaiensis FHC16 [JTDV]
169531
169619
+
Ser
GGA
[ENA]
¡û
>W1511398922
JTDW01000007
Bacteroidota
Tamlana sedimentorum JCM 19808 [JTDW]
64410
64322
-
Ser
GGA
[ENA]
¡û
>C161047075
CP012898
Bacteroidota
Pseudalgibacter alginicilyticus HZ22 [CP012898]
1953079
1953167
+
Ser
GGA
[Ensembl]
¡û
>W121110475
ALIH01000003
Bacteroidota
Algibacter luteus P7-3-5 [ALIH]
47172
47084
-
Ser
GGA
[ENA]
¡û
>W1610587440
LDKC01000001
Bacteroidota
Tamlana sp. s12 [LDKC]
142456
142544
+
Ser
GGA
[ENA]
¡û
>W1610994155
LXEI01000001
Bacteroidota
Tamlana agarivorans [LXEI]
558706
558618
-
Ser
GGA
[ENA]
¡û
>W1710514677
FNBD01000001
Bacteroidota
Cellulophaga baltica [FNBD]
286307
286219
-
Ser
GGA
[ENA]
¡û
>W1710516980
FNCZ01000001
Bacteroidota
Winogradskyella thalassocola [FNCZ]
117084
116996
-
Ser
GGA
[ENA]
¡û
>W1710558025
FOLN01000003
Bacteroidota
Algibacter lectus [FOLN]
466201
466289
+
Ser
GGA
[ENA]
¡û
>W1710582202
FPKV01000001
Bacteroidota
Flaviramulus basaltis [FPKV]
1145855
1145943
+
Ser
GGA
[ENA]
¡û
>W1710587335
FQYK01000003
Bacteroidota
Algibacter luteus lutea [FQYK]
492444
492532
+
Ser
GGA
[ENA]
¡û
>W1710606136
FWXO01000001
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
393470
393380
-
Ser
GGA
[ENA]
¡û
>W1710706570
LDKC01000001
Bacteroidota
Tamlana sp. s12 [LDKC]
142456
142544
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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