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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306720 (90 seq.)
>W131043738
AMPS01000025
Alphaproteobacteria
Acidocella sp. MX-AZ02 [AMPS]
21987
22062
+
Lys
CTT
[ENA]
¡û
>W1711312060
MASI01000001
Alphaproteobacteria
Methyloligella halotolerans [MASI]
784108
784033
-
Lys
CTT
[ENA]
¡û
>WENV180070629
MPLZ02180260
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
1035
960
-
Lys
CTT
[ENA]
¡û
>WENV180071811
MPLZ02263941
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
5969
6044
+
Lys
CTT
[ENA]
¡û
>WENV180075143
MPMA02190799
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
409
334
-
Lys
CTT
[ENA]
¡û
>WENV180080180
MPMB02211934
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
90
15
-
Lys
CTT
[ENA]
¡û
>WENV181414251
OGCL01000142
[OGCL] hot springs metagenome; Hot spring water
6824
6898
+
Lys
CTT
[ENA]
¡û
>WENV170709594
LNFM01000512
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9
84
+
Lys
CTT
[ENA]
¡û
>WENV170710596
LNFM01002129
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
86
11
-
Lys
CTT
[ENA]
¡û
>WENV170710651
LNFM01002310
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9
84
+
Lys
CTT
[ENA]
¡û
>WENV170711327
LNFM01004596
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
14121
14196
+
Lys
CTT
[ENA]
¡û
>WENV170712350
LNFM01012295
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5119
5194
+
Lys
CTT
[ENA]
¡û
>WENV170958092
MKWU01000499
[MKWU] sponge metagenome;
62835
62910
+
Lys
CTT
[ENA]
¡û
>WENV170959155
MKWU01003308
[MKWU] sponge metagenome;
3786
3711
-
Lys
CTT
[ENA]
¡û
>WENV170962711
MRWF01024611
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
13976
14051
+
Lys
CTT
[ENA]
¡û
>WENV170963574
MRWG01000304
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
39288
39213
-
Lys
CTT
[ENA]
¡û
>WENV170963935
MRWG01001416
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
3072
3147
+
Lys
CTT
[ENA]
¡û
>WENV170964039
MRWG01002240
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
4127
4202
+
Lys
CTT
[ENA]
¡û
>WENV170964301
MRWG01007508
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1942
1867
-
Lys
CTT
[ENA]
¡û
>W1910182374
BJMV01000006
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
112272
112347
+
Lys
CTT
[ENA]
¡û
>W1910612877
LGQS01000028
Alphaproteobacteria
Azospirillum sp. TSA6c [LGQS]
5338306
5338231
-
Lys
CTT
[ENA]
¡û
>W1910612878
LGQS01000028
Alphaproteobacteria
Azospirillum sp. TSA6c [LGQS]
5338207
5338132
-
Lys
CTT
[ENA]
¡û
>W1910613191
LGQX01000064
Alphaproteobacteria
Azospirillum sp. TSH100 [LGQX]
10138
10063
-
Lys
CTT
[ENA]
¡û
>W1910613207
LGQY01000004
Alphaproteobacteria
Azospirillum sp. TSO5 [LGQY]
10182
10107
-
Lys
CTT
[ENA]
¡û
>W1910613240
LGQY01000085
Alphaproteobacteria
Azospirillum sp. TSO5 [LGQY]
77
2
-
Lys
CTT
[ENA]
¡û
>W1910613381
LGRK01000007
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
26885
26960
+
Lys
CTT
[ENA]
¡û
>W1910613382
LGRK01000007
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
27037
27112
+
Lys
CTT
[ENA]
¡û
>W1911138086
NOWT01000006
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
191131
191056
-
Lys
CTT
[ENA]
¡û
>W1911138087
NOWT01000006
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
190979
190904
-
Lys
CTT
[ENA]
¡û
>W1911139343
NOXU01000031
Alphaproteobacteria
Niveispirillum sp. 1-14 [NOXU]
344235
344310
+
Lys
CTT
[ENA]
¡û
>W1911139344
NOXU01000031
Alphaproteobacteria
Niveispirillum sp. 1-14 [NOXU]
344339
344414
+
Lys
CTT
[ENA]
¡û
>W1911148444
NPEW01000023
Alphaproteobacteria
Rhodoplanes piscinae DSM 19946 [NPEW]
675
750
+
Lys
CTT
[ENA]
¡û
>W1810223550
POTD01000010
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
188738
188663
-
Lys
CTT
[ENA]
¡û
>W1810223551
POTD01000010
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
188586
188511
-
Lys
CTT
[ENA]
¡û
>W1810226123
POWG01000045
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
45552
45627
+
Lys
CTT
[ENA]
¡û
>W1810226124
POWG01000045
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
45704
45779
+
Lys
CTT
[ENA]
¡û
>W1810692557
QLKQ01000007
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
87272
87197
-
Lys
CTT
[ENA]
¡û
>W1810692558
QLKQ01000007
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
87121
87046
-
Lys
CTT
[ENA]
¡û
>C151002854
AP014648
Alphaproteobacteria
Methyloceanibacter caenitepidi Gela4 [AP014648]
1691422
1691497
+
Lys
CTT
[Ensembl]
¡û
>C151004004
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
332663
332738
+
Lys
CTT
[Ensembl]
¡û
>C151004056
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
332617
332692
+
Lys
CTT
[Ensembl]
¡û
>W2010559954
JAASQO010000004
Alphaproteobacteria
Parvibaculum indicum DSM 25305 [JAASQO]
151959
152034
+
Lys
CTT
[ENA]
¡û
>W2010593325
JABEQE010000002
Alphaproteobacteria
Gluconacetobacter asukensis LMG 27724 [JABEQE]
329919
329994
+
Lys
CTT
[ENA]
¡û
>W2010593508
JABEQH010000020
Alphaproteobacteria
Gluconacetobacter johannae LMG 21312 [JABEQH]
52443
52368
-
Lys
CTT
[ENA]
¡û
>W2010593524
JABEQI010000001
Alphaproteobacteria
Gluconacetobacter liquefaciens LMG 1382 [JABEQI]
121945
121870
-
Lys
CTT
[ENA]
¡û
>W2010593842
JABEQO010000015
Alphaproteobacteria
Gluconacetobacter sp. 1b LMG 1731 [JABEQO]
30021
30096
+
Lys
CTT
[ENA]
¡û
>W2010651905
JABXXR010000064
Alphaproteobacteria
Ameyamaea chiangmaiensis LMG 27010 [JABXXR]
11159
11084
-
Lys
CTT
[ENA]
¡û
>W2010699791
JACHFJ010000001
Alphaproteobacteria
Acidocella aromatica DSM 27026 [JACHFJ]
241297
241222
-
Lys
CTT
[ENA]
¡û
>W2010703707
JACHII010000032
Alphaproteobacteria
Roseospira marina DSM 15113 [JACHII]
9940
10015
+
Lys
CTT
[ENA]
¡û
>W2110111801
CAJHNI010000005
Alphaproteobacteria
Acidiphilium sp. C61 [CAJHNI]
1002463
1002388
-
Lys
CTT
[ENA]
¡û
>W2110138006
JAAEDJ010000001
Alphaproteobacteria
Roseomonas alkaliterrae LMG 31230 [JAAEDJ]
42853
42928
+
Lys
CTT
[ENA]
¡û
>W2110138134
JAAEDM010000020
Alphaproteobacteria
Roseomonas soli LMG 31231 [JAAEDM]
27975
27900
-
Lys
CTT
[ENA]
¡û
>W2110198469
JACADQ010000073
Alphaproteobacteria
Roseomonas sp. MO17 [JACADQ]
12437
12512
+
Lys
CTT
[ENA]
¡û
>W2110293544
JACZCQ010000003
Alphaproteobacteria
Nisaea sp. NBU1469 [JACZCQ]
495597
495522
-
Lys
CTT
[ENA]
¡û
>W2110423182
JAEKJA010000003
Alphaproteobacteria
Acuticoccus sp. 2012 [JAEKJA]
295623
295548
-
Lys
CTT
[ENA]
¡û
>W2110429673
JAEMUJ010000124
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [JAEMUJ]
5964
5889
-
Lys
CTT
[ENA]
¡û
>W2110432719
JAENHM010000073
Alphaproteobacteria
Azospirillum sp. YIM B02556 [JAENHM]
313786
313861
+
Lys
CTT
[ENA]
¡û
>W2110432720
JAENHM010000073
Alphaproteobacteria
Azospirillum sp. YIM B02556 [JAENHM]
313885
313960
+
Lys
CTT
[ENA]
¡û
>W2110432721
JAENHM010000073
Alphaproteobacteria
Azospirillum sp. YIM B02556 [JAENHM]
313984
314059
+
Lys
CTT
[ENA]
¡û
>W2110503552
JAFIQU010000009
Alphaproteobacteria
Arenibaculum pallidiluteum SYSU D00532 [JAFIQU]
107606
107531
-
Lys
CTT
[ENA]
¡û
>W2110503631
JAFIQV010000072
Alphaproteobacteria
Azospirillum sp. SYSU D00513 [JAFIQV]
20326
20401
+
Lys
CTT
[ENA]
¡û
>W2110503632
JAFIQV010000072
Alphaproteobacteria
Azospirillum sp. SYSU D00513 [JAFIQV]
20443
20518
+
Lys
CTT
[ENA]
¡û
>W2110520874
JAFVMF010000023
Alphaproteobacteria
Acetobacter sacchari TBRC 11175 [JAFVMF]
47954
48029
+
Lys
CTT
[ENA]
¡û
>W2110552757
JAGINN010000025
Alphaproteobacteria
Azospirillum melinis TMCY 0552 [JAGINN]
67253
67178
-
Lys
CTT
[ENA]
¡û
>W2110552758
JAGINN010000025
Alphaproteobacteria
Azospirillum melinis TMCY 0552 [JAGINN]
67154
67079
-
Lys
CTT
[ENA]
¡û
>W2110590366
JAHBGD010000013
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [JAHBGD]
188358
188283
-
Lys
CTT
[ENA]
¡û
>W2110590410
JAHBGE010000036
Alphaproteobacteria
Ancylobacter lacus VKM B-3280 [JAHBGE]
16863
16938
+
Lys
CTT
[ENA]
¡û
>W2110640633
JAHREN010000001
Alphaproteobacteria
Siccirubricoccus sp. G192 [JAHREN]
4591140
4591065
-
Lys
CTT
[ENA]
¡û
>W2110677558
JAIFZR010000005
Alphaproteobacteria
Azospirillum agricola R1C [JAIFZR]
1604351
1604426
+
Lys
CTT
[ENA]
¡û
>W2110677559
JAIFZR010000005
Alphaproteobacteria
Azospirillum agricola R1C [JAIFZR]
1604454
1604529
+
Lys
CTT
[ENA]
¡û
>C211095255
CP053923
Alphaproteobacteria
Defluviicoccus vanus Ben 114 [CP053923]
3763548
3763473
-
Lys
CTT
-
¡û
>W2110734988
JAJDJU010000036
Alphaproteobacteria
Acidocella sp. KAb 2-4 [JAJDJU]
5283
5208
-
Lys
CTT
[ENA]
¡û
>C231082761
CP059449
Alphaproteobacteria
Azospirillum brasilense 2020WEIHUA_K [CP059449]
1846613
1846688
+
Lys
CTT
-
¡û
>C231454238
CP102480
Alphaproteobacteria
Nisaea acidiphila MEBiC11861 [CP102480]
4090774
4090849
+
Lys
CTT
-
¡û
>C231536634
CP110774
Alphaproteobacteria
Acidocella sp. MX-AZ03 [CP110774]
1353765
1353690
-
Lys
CTT
-
¡û
>C241080693
CP043506
Alphaproteobacteria
Acetobacter vaccinii KACC 21233 [CP043506]
1126254
1126329
+
Lys
CTT
-
¡û
>C241167874
CP054619
Alphaproteobacteria
Azospirillum oryzae KACC 14407 [CP054619]
1000139
1000214
+
Lys
CTT
-
¡û
>C241167875
CP054619
Alphaproteobacteria
Azospirillum oryzae KACC 14407 [CP054619]
1000238
1000313
+
Lys
CTT
-
¡û
>C241174632
CP058705
Alphaproteobacteria
Defluviicoccus sp. [CP058705]
1973475
1973400
-
Lys
CTT
-
¡û
>C241274493
CP127015
Alphaproteobacteria
Nguyenibacter sp. L1 [CP127015]
2464140
2464215
+
Lys
CTT
-
¡û
>W2310008098
BAPR01000436
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BAPR]
34595
34670
+
Lys
CTT
[ENA]
¡û
>C121009442
CP003236
Alphaproteobacteria
Tistrella mobilis KA081020-065 [CP003236]
857213
857288
+
Lys
CTT
[Ensembl]
¡û
>W1610041043
BANC01000041
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
34435
34510
+
Lys
CTT
[ENA]
¡û
>W1710038241
BANC01000041
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
34435
34510
+
Lys
CTT
[ENA]
¡û
>W1710514016
FNAP01000007
Alphaproteobacteria
Rhodospira trueperi [FNAP]
20453
20378
-
Lys
CTT
[ENA]
¡û
>W1710516802
FNCV01000003
Alphaproteobacteria
Roseospirillum parvum [FNCV]
104017
103942
-
Lys
CTT
[ENA]
¡û
>W1710584199
FQVJ01000011
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [FQVJ]
87992
88067
+
Lys
CTT
[ENA]
¡û
>W1710624574
JOPA01000042
Alphaproteobacteria
Acetobacter indonesiensis [JOPA]
7506
7431
-
Lys
CTT
[ENA]
¡û
>W1710626761
JPIS01000029
Alphaproteobacteria
Azospirillum brasilense [JPIS]
53815
53740
-
Lys
CTT
[ENA]
¡û
>W1710626762
JPIS01000029
Alphaproteobacteria
Azospirillum brasilense [JPIS]
53663
53588
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK