This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30679 (36 seq.)
>W1711272803
LZFP01000001
Bacteroidota
Maribacter hydrothermalis T28 [LZFP]
591851
591941
+
Ser
GGA
[ENA]
¡û
>W1711711556
MTAZ01000030
Bacteroidota
Arenibacter amylolyticus AK53 [MTAZ]
27200
27112
-
Ser
GGA
[ENA]
¡û
>W131063647
ANLA01000004
Bacteroidota
Xanthomarina gelatinilytica AK20 [ANLA]
628949
629037
+
Ser
GGA
[ENA]
¡û
>W131223438
AUCB01000007
Bacteroidota
Arenibacter certesii DSM 19833 [AUCB]
121432
121344
-
Ser
GGA
[ENA]
¡û
>W131234644
AUKX01000032
Bacteroidota
Arenibacter latericius DSM 15913 [AUKX]
27412
27324
-
Ser
GGA
[ENA]
¡û
>C171010424
CP011318
Bacteroidota
Maribacter sp. 1_2014MBL_MicDiv [CP011318]
2601165
2601255
+
Ser
GGA
-
¡û
>C171083180
CP018760
Bacteroidota
Maribacter hydrothermalis T28 [CP018760]
2555356
2555446
+
Ser
GGA
-
¡û
>WENV183748990
PPFU01105065
[PPFU] hypolithon metagenome; Antarctic Hypolithon
965
877
-
Ser
GGA
[ENA]
¢þ
>WENV170016155
AZIJ01013286
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
1691
1603
-
Ser
GGA
[ENA]
¢þ
>WENV170249187
CEQR01107990
[CEQR] marine metagenome genome assembly TARA_070_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1101
1011
-
Ser
GGA
[ENA]
¢þ
>WENV170263699
CERC01066615
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
35112
35202
+
Ser
GGA
[ENA]
¢þ
>WENV170265149
CERD01114373
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
35110
35200
+
Ser
GGA
[ENA]
¢þ
>WENV170356857
CETJ01073759
[CETJ] marine metagenome genome assembly TARA_122_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
275
187
-
Ser
GGA
[ENA]
¢þ
>WENV170672161
LAZR01000011
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
38288
38378
+
Ser
GGA
[ENA]
¢þ
>WENV170822978
MDSY01049578
[MDSY] marine metagenome; seawater
22256
22346
+
Ser
GGA
[ENA]
¢þ
>WENV170991828
MWWA01337599
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
294
384
+
Ser
GGA
[ENA]
¢þ
>C191127762
CP034570
Bacteroidota
Maribacter sp. MJ134 [CP034570]
2290022
2289934
-
Ser
GGA
-
¡û
>C191182951
CP040812
Bacteroidota
Antarcticibacterium flavum KCTC 52984 [CP040812]
2603472
2603560
+
Ser
GGA
-
¡û
>W141563290
JHZW01000002
Bacteroidota
Maribacter sp. Hel_I_7 [JHZW]
564312
564222
-
Ser
GGA
[ENA]
¡û
>W141818128
JQLH01000001
Bacteroidota
Maribacter forsetii DSM 18668 [JQLH]
788656
788746
+
Ser
GGA
[ENA]
¡û
>W1910547508
FZNV01000001
Bacteroidota
Maribacter sedimenticola DSM 19840 [FZNV]
633677
633765
+
Ser
GGA
[ENA]
¡û
>W1910549271
FZPD01000002
Bacteroidota
Ekhidna lutea DSM 19307 [FZPD]
613485
613397
-
Ser
GGA
[ENA]
¡û
>W1910693637
MDGN01000054
Bacteroidota
Maribacter sp. 4U21 [MDGN]
94067
94155
+
Ser
GGA
[ENA]
¡û
>W1810063413
PDUT01000001
Bacteroidota
Maribacter sp. 6B07 [PDUT]
884363
884275
-
Ser
GGA
[ENA]
¡û
>W1810533002
QCZD01000002
Bacteroidota
Maribacter litoralis SDRB-Phe2 [QCZD]
139839
139927
+
Ser
GGA
[ENA]
¡û
>C161027988
CP010535
Bacteroidota
Sediminicola sp. YIK13 [CP010535]
3252571
3252659
+
Ser
GGA
[Ensembl]
¡û
>W1610588065
LDPE01000001
Bacteroidota
Maribacter dokdonensis DSW-8 [LDPE]
1917368
1917278
-
Ser
GGA
[ENA]
¡û
>W1611032152
LZFP01000001
Bacteroidota
Maribacter hydrothermalis T28 [LZFP]
591851
591941
+
Ser
GGA
[ENA]
¡û
>W1710536203
FNTB01000001
Bacteroidota
Maribacter dokdonensis [FNTB]
2000670
2000760
+
Ser
GGA
[ENA]
¡û
>W1710542926
FNZN01000004
Bacteroidota
Maribacter orientalis [FNZN]
185144
185054
-
Ser
GGA
[ENA]
¡û
>W1710575133
FOYX01000001
Bacteroidota
Maribacter stanieri [FOYX]
1484999
1485089
+
Ser
GGA
[ENA]
¡û
>W1710587897
FQYX01000011
Bacteroidota
Arenibacter nanhaiticus [FQYX]
38204
38292
+
Ser
GGA
[ENA]
¡û
>W1710589150
FQZX01000001
Bacteroidota
Maribacter aquivivus [FQZX]
1522388
1522478
+
Ser
GGA
[ENA]
¡û
>W1710595582
FTMA01000001
Bacteroidota
Maribacter ulvicola [FTMA]
1244188
1244278
+
Ser
GGA
[ENA]
¡û
>W1710602700
FUYL01000003
Bacteroidota
Maribacter arcticus [FUYL]
173825
173735
-
Ser
GGA
[ENA]
¡û
>W1710707345
LDPE01000001
Bacteroidota
Maribacter dokdonensis DSW-8 [LDPE]
1917368
1917278
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK