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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30682 (81 seq.)
>W1710853031
LLWH01000002
Gammaproteobacteria
Pseudomonas endophytica [LLWH]
69923
70013
+
Ser
GCT
[ENA]
¡û
>W1710853114
LLWI01000075
Gammaproteobacteria
Pseudomonas sp. TAD18 [LLWI]
200726
200636
-
Ser
GCT
[ENA]
¡û
>W1710853170
LLWJ01000064
Gammaproteobacteria
Pseudomonas sp. TAA207 [LLWJ]
200823
200733
-
Ser
GCT
[ENA]
¡û
>W1711486306
MKEP01000005
Gammaproteobacteria
Pseudomonas sp. J237 J237 [MKEP]
561749
561659
-
Ser
GCT
[ENA]
¡û
>W1711511787
MLCS01000015
Gammaproteobacteria
Pseudomonas lundensis BS-2016 [MLCS]
13277
13187
-
Ser
GCT
[ENA]
¡û
>W1711511864
MLCT01000019
Gammaproteobacteria
Pseudomonas sp. BS-2016 [MLCT]
210999
211089
+
Ser
GCT
[ENA]
¡û
>W1711511939
MLCU01000078
Gammaproteobacteria
Pseudomonas lundensis BS-2016 [MLCU]
38683
38593
-
Ser
GCT
[ENA]
¡û
>W1711513885
MLGD01000012
Gammaproteobacteria
Pseudomonas marincola [MLGD]
561748
561658
-
Ser
GCT
[ENA]
¡û
>W1711625979
MPJC01000009
Gammaproteobacteria
Pseudomonas versuta A4R1.5 [MPJC]
240543
240453
-
Ser
GCT
[ENA]
¡û
>W1711626028
MPJD01000018
Gammaproteobacteria
Pseudomonas versuta A4R1.12 [MPJD]
448893
448983
+
Ser
GCT
[ENA]
¡û
>W1711680596
MRWM01000932
Gammaproteobacteria
Pseudomonas sp. BIN4 [MRWM]
1238
1148
-
Ser
GCT
[ENA]
¡û
>C171065942
CP017687
Gammaproteobacteria
Pseudomonas lundensis AU1044 [CP017687]
3670044
3670134
+
Ser
GCT
-
¡û
>C171114295
CP020892
Gammaproteobacteria
Pseudomonas sp. M30-35 [CP020892]
3284178
3284088
-
Ser
GCT
-
¡û
>C171116162
CP021132
Gammaproteobacteria
Pseudomonas fragi NMC25 [CP021132]
3630061
3629971
-
Ser
GCT
-
¡û
>W131091357
AOGS01000008
Gammaproteobacteria
Pseudomonas sp. Lz4W [AOGS]
256412
256502
+
Ser
GCT
[ENA]
¡û
>W141079585
ATLR01000013
Gammaproteobacteria
Pseudomonas psychrophila CF149 [ATLR]
151005
150915
-
Ser
GCT
[ENA]
¡û
>W141143656
AWSQ01000002
Gammaproteobacteria
Pseudomonas taeanensis MS-3 [AWSQ]
686242
686332
+
Ser
GCT
[ENA]
¡û
>WENV170939274
MDTG01323223
[MDTG] marine metagenome; seawater
2318
2408
+
Ser
GCT
[ENA]
¢þ
>C181025606
CP017432
Gammaproteobacteria
Pseudomonas sp. Lz4W [CP017432]
3709052
3708962
-
Ser
GCT
-
¡û
>C181209156
LS483370
Gammaproteobacteria
Pseudomonas taetrolens NCTC10697 [LS483370]
3549531
3549441
-
Ser
GCT
-
¡û
>C191012844
CP016849
Gammaproteobacteria
Pseudomonas sp. TMW 2.1634 [CP016849]
2442839
2442749
-
Ser
GCT
-
¡û
>C191210424
LR134393
Gammaproteobacteria
Pseudomonas taetrolens NCTC8067 [LR134393]
3761657
3761567
-
Ser
GCT
-
¡û
>W1910548069
FZOG01000002
Gammaproteobacteria
Pseudomonas segetis CIP 108523 [FZOG]
16584
16494
-
Ser
GCT
[ENA]
¡û
>W1911175562
NQKD01000001
Gammaproteobacteria
Pseudomonas lundensis L1822 [NQKD]
274082
273992
-
Ser
GCT
[ENA]
¡û
>W1911175656
NQKE01000013
Gammaproteobacteria
Pseudomonas lundensis L1819 [NQKE]
33188
33098
-
Ser
GCT
[ENA]
¡û
>W1911175695
NQKF01000003
Gammaproteobacteria
Pseudomonas lundensis L1817 [NQKF]
29187
29277
+
Ser
GCT
[ENA]
¡û
>W1911175764
NQKG01000004
Gammaproteobacteria
Pseudomonas lundensis L1814 [NQKG]
290765
290855
+
Ser
GCT
[ENA]
¡û
>W1911175873
NQKH01000042
Gammaproteobacteria
Pseudomonas lundensis L1810 [NQKH]
378
468
+
Ser
GCT
[ENA]
¡û
>W1911175900
NQKI01000019
Gammaproteobacteria
Pseudomonas lundensis L1802 [NQKI]
29939
30029
+
Ser
GCT
[ENA]
¡û
>W1911175982
NQKJ01000035
Gammaproteobacteria
Pseudomonas lundensis L1788 [NQKJ]
18482
18392
-
Ser
GCT
[ENA]
¡û
>W1911176053
NQKK01000027
Gammaproteobacteria
Pseudomonas fragi F1821 [NQKK]
48322
48412
+
Ser
GCT
[ENA]
¡û
>W1911176149
NQKL01000031
Gammaproteobacteria
Pseudomonas fragi F1820 [NQKL]
4431
4341
-
Ser
GCT
[ENA]
¡û
>W1911176168
NQKM01000006
Gammaproteobacteria
Pseudomonas fragi F1818 [NQKM]
106416
106326
-
Ser
GCT
[ENA]
¡û
>W1911176285
NQKN01000023
Gammaproteobacteria
Pseudomonas fragi F1816 [NQKN]
6696
6786
+
Ser
GCT
[ENA]
¡û
>W1911176324
NQKO01000011
Gammaproteobacteria
Pseudomonas fragi F1815 [NQKO]
119434
119524
+
Ser
GCT
[ENA]
¡û
>W1911176376
NQKP01000001
Gammaproteobacteria
Pseudomonas fragi F1813 [NQKP]
317450
317360
-
Ser
GCT
[ENA]
¡û
>W1911176448
NQKQ01000002
Gammaproteobacteria
Pseudomonas fragi F1801 [NQKQ]
172735
172825
+
Ser
GCT
[ENA]
¡û
>W1911176541
NQKR01000016
Gammaproteobacteria
Pseudomonas fragi F1794 [NQKR]
6701
6791
+
Ser
GCT
[ENA]
¡û
>W1911176591
NQKS01000006
Gammaproteobacteria
Pseudomonas fragi F1793 [NQKS]
265192
265102
-
Ser
GCT
[ENA]
¡û
>W1911176689
NQKT01000033
Gammaproteobacteria
Pseudomonas fragi F1792 [NQKT]
6691
6781
+
Ser
GCT
[ENA]
¡û
>W1911176766
NQKU01000025
Gammaproteobacteria
Pseudomonas fragi F1791 [NQKU]
63176
63086
-
Ser
GCT
[ENA]
¡û
>W1911176806
NQKV01000005
Gammaproteobacteria
Pseudomonas fragi F1786 [NQKV]
280807
280717
-
Ser
GCT
[ENA]
¡û
>W1911494646
OBKZ01000009
Gammaproteobacteria
Pseudomonas lundensis MFPA15A1205 [OBKZ]
295
205
-
Ser
GCT
[ENA]
¡û
>W1911802991
QYUR01000006
Gammaproteobacteria
Pseudomonas cavernicola K1S02-6 [QYUR]
368832
368742
-
Ser
GCT
[ENA]
¡û
>W1810224571
POUN01000003
Gammaproteobacteria
Stutzerimonas stutzeri KC [POUN]
566576
566666
+
Ser
GCT
[ENA]
¡û
>W1810365954
PVUM01000026
Gammaproteobacteria
Pseudomonas fragi 21197/1 [PVUM]
10719
10629
-
Ser
GCT
[ENA]
¡û
>C151097138
CP012676
Gammaproteobacteria
Pseudomonas versuta L10.10 [CP012676]
3228445
3228355
-
Ser
GCT
-
¡û
>W1511530789
JYKX01000002
Gammaproteobacteria
Pseudomonas deceptionensis DSM 26521 [JYKX]
261956
261866
-
Ser
GCT
[ENA]
¡û
>W1511530830
JYKY01000010
Gammaproteobacteria
Pseudomonas lundensis DSM 6252 [JYKY]
137000
137090
+
Ser
GCT
[ENA]
¡û
>W1511530907
JYKZ01000004
Gammaproteobacteria
Pseudomonas psychrophila DSM 17535 [JYKZ]
286659
286569
-
Ser
GCT
[ENA]
¡û
>W1511530958
JYLA01000002
Gammaproteobacteria
Pseudomonas taetrolens DSM 21104 [JYLA]
445103
445193
+
Ser
GCT
[ENA]
¡û
>W1511531259
JYLF01000002
Gammaproteobacteria
Pseudomonas weihenstephanensis DSM 29166 [JYLF]
514658
514748
+
Ser
GCT
[ENA]
¡û
>W1511531307
JYLG01000002
Gammaproteobacteria
Pseudomonas weihenstephanensis DSM 28140 [JYLG]
222378
222288
-
Ser
GCT
[ENA]
¡û
>W1511591660
LBHT01000004
Gammaproteobacteria
Pseudomonas psychrophila RGCB 166 [LBHT]
37855
37765
-
Ser
GCT
[ENA]
¡û
>W1511624948
LCYR01000012
Gammaproteobacteria
Pseudomonas fluorescens AU1044 [LCYR]
225014
224924
-
Ser
GCT
[ENA]
¡û
>W1511625010
LCYS01000037
Gammaproteobacteria
Pseudomonas lundensis AU2390 [LCYS]
36928
36838
-
Ser
GCT
[ENA]
¡û
>W1511625069
LCYT01000020
Gammaproteobacteria
Pseudomonas lundensis AU7350 [LCYT]
305100
305010
-
Ser
GCT
[ENA]
¡û
>W1511625128
LCYU01000017
Gammaproteobacteria
Pseudomonas lundensis AU10414 [LCYU]
305113
305023
-
Ser
GCT
[ENA]
¡û
>W1511625151
LCYV01000009
Gammaproteobacteria
Pseudomonas lundensis AU11122 [LCYV]
211432
211522
+
Ser
GCT
[ENA]
¡û
>W1511625246
LCYW01000018
Gammaproteobacteria
Pseudomonas lundensis AU11164 [LCYW]
304995
304905
-
Ser
GCT
[ENA]
¡û
>W1511625298
LCYX01000016
Gammaproteobacteria
Pseudomonas lundensis AU11235 [LCYX]
305207
305117
-
Ser
GCT
[ENA]
¡û
>W1511625359
LCYY01000019
Gammaproteobacteria
Pseudomonas lundensis AU11136 [LCYY]
305661
305571
-
Ser
GCT
[ENA]
¡û
>W1511625410
LCYZ01000011
Gammaproteobacteria
Pseudomonas lundensis AU12597 [LCYZ]
221863
221773
-
Ser
GCT
[ENA]
¡û
>W1511625471
LCZA01000022
Gammaproteobacteria
Pseudomonas lundensis AU12644 [LCZA]
138594
138504
-
Ser
GCT
[ENA]
¡û
>W11160809
AFFX01000013
Gammaproteobacteria
Pseudomonas sp. S9 [AFFX]
72759
72849
+
Ser
GCT
[ENA]
¡û
>C161061448
CP013861
Gammaproteobacteria
Pseudomonas fragi P121 [CP013861]
3828907
3828817
-
Ser
GCT
[Ensembl]
¡û
>W121044711
AHZX01000153
Gammaproteobacteria
Pseudomonas fragi B25 [AHZX]
9272
9362
+
Ser
GCT
[ENA]
¡û
>W121044759
AHZY01000018
Gammaproteobacteria
Pseudomonas fragi A22 [AHZY]
17773
17683
-
Ser
GCT
[ENA]
¡û
>W121111151
ALJC01000039
Gammaproteobacteria
Pseudomonas psychrophila HA-4 [ALJC]
241
151
-
Ser
GCT
[ENA]
¡û
>W1610716155
LLWH01000002
Gammaproteobacteria
Pseudomonas endophytica [LLWH]
69923
70013
+
Ser
GCT
[ENA]
¡û
>W1610716238
LLWI01000075
Gammaproteobacteria
Pseudomonas sp. TAD18 [LLWI]
200726
200636
-
Ser
GCT
[ENA]
¡û
>W1610716294
LLWJ01000064
Gammaproteobacteria
Pseudomonas sp. TAA207 [LLWJ]
200823
200733
-
Ser
GCT
[ENA]
¡û
>W1710075897
BDAB01000011
Gammaproteobacteria
Pseudomonas fragi NBRC 3458 [BDAB]
28428
28518
+
Ser
GCT
[ENA]
¡û
>W1710505105
FMTL01000002
Gammaproteobacteria
Pseudomonas peli [FMTL]
187942
188032
+
Ser
GCT
[ENA]
¡û
>W1710527438
FNLA01000002
Gammaproteobacteria
Pseudomonas lundensis [FNLA]
1310715
1310805
+
Ser
GCT
[ENA]
¡û
>W1710534239
FNRS01000001
Gammaproteobacteria
Pseudomonas taetrolens [FNRS]
3723980
3723890
-
Ser
GCT
[ENA]
¡û
>W1710534799
FNSC01000001
Gammaproteobacteria
Pseudomonas anguilliseptica [FNSC]
3039613
3039703
+
Ser
GCT
[ENA]
¡û
>W1710537956
FNUD01000002
Gammaproteobacteria
Pseudomonas deceptionensis [FNUD]
4662373
4662283
-
Ser
GCT
[ENA]
¡û
>W1710564400
FOQL01000006
Gammaproteobacteria
Pseudomonas guineae [FOQL]
38232
38142
-
Ser
GCT
[ENA]
¡û
>W1710572747
FOWX01000008
Gammaproteobacteria
Pseudomonas borbori [FOWX]
32748
32838
+
Ser
GCT
[ENA]
¡û
>W1710577802
FPBC01000001
Gammaproteobacteria
Pseudomonas marincola [FPBC]
535037
534947
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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