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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30737 (127 seq.)
>W1711093763
LTFH01000038
Actinomycetota
Corynebacterium sp. HMSC062E11 HMSC062E11 [LTFH]
30039
29949
-
Ser
CGA
[ENA]
¡û
>W1711094331
LTFV01000038
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
73061
72971
-
Ser
CGA
[ENA]
¡û
>W1711094371
LTFW01000035
Actinomycetota
Corynebacterium sp. HMSC074A09 HMSC074A09 [LTFW]
6841
6931
+
Ser
CGA
[ENA]
¡û
>W1711094456
LTFX01000099
Actinomycetota
Corynebacterium sp. HMSC076G08 HMSC076G08 [LTFX]
23310
23400
+
Ser
CGA
[ENA]
¡û
>W1711094959
LTGK01000049
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
60026
59936
-
Ser
CGA
[ENA]
¡û
>W1711095291
LTGR01000021
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
64621
64531
-
Ser
CGA
[ENA]
¡û
>W1711096018
LTHJ01000056
Actinomycetota
Corynebacterium sp. HMSC065D07 [LTHJ]
112563
112653
+
Ser
CGA
[ENA]
¡û
>W1711097263
LTIM01000097
Actinomycetota
Corynebacterium sp. HMSC072A02 [LTIM]
6408
6498
+
Ser
CGA
[ENA]
¡û
>W1711099715
LTKS01000034
Actinomycetota
Corynebacterium sp. HMSC070E08 [LTKS]
27947
27857
-
Ser
CGA
[ENA]
¡û
>W1711099783
LTKT01000045
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
9023
9113
+
Ser
CGA
[ENA]
¡û
>W1711106080
LTRL01000042
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
8958
9048
+
Ser
CGA
[ENA]
¡û
>W1711106209
LTRQ01000004
Actinomycetota
Corynebacterium sp. HMSC035E02 [LTRQ]
10621
10711
+
Ser
CGA
[ENA]
¡û
>W1711106920
LTSH01000094
Actinomycetota
Corynebacterium sp. HMSC056F09 [LTSH]
6100
6190
+
Ser
CGA
[ENA]
¡û
>W1711108158
LTTL01000047
Actinomycetota
Corynebacterium sp. HMSC034H07 HMSC034H07 [LTTL]
1815
1725
-
Ser
CGA
[ENA]
¡û
>W1711108574
LTTW01000032
Actinomycetota
Corynebacterium sp. HMSC066C02 [LTTW]
204570
204660
+
Ser
CGA
[ENA]
¡û
>W1711108690
LTTZ01000004
Actinomycetota
Corynebacterium sp. HMSC068G04 [LTTZ]
94396
94306
-
Ser
CGA
[ENA]
¡û
>W1711109272
LTUN01000023
Actinomycetota
Corynebacterium sp. HMSC074C01 [LTUN]
2602
2692
+
Ser
CGA
[ENA]
¡û
>W1711109482
LTUR01000089
Actinomycetota
Corynebacterium sp. HMSC078C09 [LTUR]
44844
44934
+
Ser
CGA
[ENA]
¡û
>W1711109811
LTUY01000086
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
20861
20951
+
Ser
CGA
[ENA]
¡û
>W1711110628
LTVS01000031
Actinomycetota
Corynebacterium sp. HMSC072D12 [LTVS]
44017
44107
+
Ser
CGA
[ENA]
¡û
>W1711110993
LTWA01000098
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
5093
5183
+
Ser
CGA
[ENA]
¡û
>W1711112855
LTXU01000020
Actinomycetota
Corynebacterium sp. HMSC078H07 [LTXU]
395
305
-
Ser
CGA
[ENA]
¡û
>W1711186604
LWOI01000117
Actinomycetota
Corynebacterium sp. HMSC05E07 [LWOI]
60494
60404
-
Ser
CGA
[ENA]
¡û
>W1711186679
LWOK01000015
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
64626
64536
-
Ser
CGA
[ENA]
¡û
>W1711187689
LWPR01000031
Actinomycetota
Corynebacterium sp. HMSC04H06 [LWPR]
22669
22579
-
Ser
CGA
[ENA]
¡û
>W1711188260
LWQH01000004
Actinomycetota
Corynebacterium sp. HMSC069E04 [LWQH]
64190
64100
-
Ser
CGA
[ENA]
¡û
>W1711507531
MKXT01000009
Actinomycetota
Corynebacterium sp. S5S1 [MKXT]
62969
63057
+
Ser
CGA
[ENA]
¡û
>W1712077702
NGUZ01000010
Actinomycetota
Corynebacterium kefirresidentii OG2 [NGUZ]
56568
56656
+
Ser
CGA
[ENA]
¡û
>W131160863
AQXB01000003
Actinomycetota
Corynebacterium mastitidis DSM 44356 [AQXB]
188662
188752
+
Ser
CGA
[ENA]
¡û
>WENV180228509
OBCD01000039
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
62927
63015
+
Ser
CGA
[ENA]
¢þ
>WENV180554383
OCJN01000234
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
4717
4805
+
Ser
CGA
[ENA]
¢þ
>WENV180711609
ODFP01012977
[ODFP] human metagenome; G_DNA_Anterior nares
109
21
-
Ser
CGA
[ENA]
¢þ
>WENV180766223
ODIE01000061
[ODIE] human metagenome; G_DNA_Anterior nares
2396
2484
+
Ser
CGA
[ENA]
¢þ
>WENV180836550
ODKF01000757
[ODKF] human metagenome; G_DNA_Anterior nares
1350
1438
+
Ser
CGA
[ENA]
¢þ
>WENV180878876
ODLY01000682
[ODLY] human metagenome; G_DNA_Anterior nares
825
913
+
Ser
CGA
[ENA]
¢þ
>WENV180913439
ODSU01000918
[ODSU] human metagenome; G_DNA_Anterior nares
103
191
+
Ser
CGA
[ENA]
¢þ
>WENV180916315
ODTC01003457
[ODTC] human metagenome; G_DNA_Anterior nares
733
821
+
Ser
CGA
[ENA]
¢þ
>WENV180917878
ODTE01001158
[ODTE] human metagenome; G_DNA_Anterior nares
934
846
-
Ser
CGA
[ENA]
¢þ
>WENV180918070
ODTF01000065
[ODTF] human metagenome; G_DNA_Anterior nares
25710
25622
-
Ser
CGA
[ENA]
¢þ
>WENV180937551
ODTW01008912
[ODTW] human metagenome; G_DNA_Anterior nares
172
84
-
Ser
CGA
[ENA]
¢þ
>WENV180966712
ODUR01000796
[ODUR] human metagenome; G_DNA_Anterior nares
588
676
+
Ser
CGA
[ENA]
¢þ
>WENV180972539
ODUV01006684
[ODUV] human metagenome; G_DNA_Anterior nares
91
3
-
Ser
CGA
[ENA]
¢þ
>WENV181000315
ODVU01004137
[ODVU] human metagenome; G_DNA_Anterior nares
678
766
+
Ser
CGA
[ENA]
¢þ
>WENV181010044
ODWG01000070
[ODWG] human metagenome; G_DNA_Anterior nares
318
406
+
Ser
CGA
[ENA]
¢þ
>WENV181030380
ODXH01000237
[ODXH] human metagenome; G_DNA_Anterior nares
103
191
+
Ser
CGA
[ENA]
¢þ
>WENV181040307
ODXR01000001
[ODXR] human metagenome; G_DNA_Anterior nares
154148
154060
-
Ser
CGA
[ENA]
¢þ
>WENV181119594
OEFI01000826
[OEFI] human metagenome; G_DNA_Anterior nares
2203
2291
+
Ser
CGA
[ENA]
¢þ
>WENV181131435
OEGC01000082
[OEGC] human metagenome; G_DNA_Anterior nares
84
172
+
Ser
CGA
[ENA]
¢þ
>WENV181212253
OFBN01001407
[OFBN] metagenome; hydrothermal vent
198
110
-
Ser
CGA
[ENA]
¢þ
>WENV181212321
OFBO01000389
[OFBO] metagenome; hydrothermal vent
198
110
-
Ser
CGA
[ENA]
¢þ
>WENV181212402
OFBP01000930
[OFBP] metagenome; hydrothermal vent
198
110
-
Ser
CGA
[ENA]
¢þ
>WENV181212470
OFBQ01000452
[OFBQ] metagenome; hydrothermal vent
198
110
-
Ser
CGA
[ENA]
¢þ
>WENV181212537
OFBR01000254
[OFBR] metagenome; hydrothermal vent
1759
1671
-
Ser
CGA
[ENA]
¢þ
>WENV181212639
OFBS01001428
[OFBS] metagenome; hydrothermal vent
198
110
-
Ser
CGA
[ENA]
¢þ
>WENV181212706
OFBT01000414
[OFBT] metagenome; hydrothermal vent
198
110
-
Ser
CGA
[ENA]
¢þ
>W141154857
AXLN01000001
Actinomycetota
Corynebacterium sp. KPL2004 [AXLN]
278471
278559
+
Ser
CGA
[ENA]
¡û
>W141154908
AXLO01000002
Actinomycetota
Corynebacterium sp. KPL1998 [AXLO]
161557
161469
-
Ser
CGA
[ENA]
¡û
>W141154959
AXLP01000001
Actinomycetota
Corynebacterium sp. KPL1996 [AXLP]
280364
280452
+
Ser
CGA
[ENA]
¡û
>W141155118
AXLS01000002
Actinomycetota
Corynebacterium sp. KPL1986 [AXLS]
1508012
1508100
+
Ser
CGA
[ENA]
¡û
>W141155159
AXLT01000002
Actinomycetota
Corynebacterium sp. KPL1860 [AXLT]
437459
437547
+
Ser
CGA
[ENA]
¡û
>W141155229
AXLU01000016
Actinomycetota
Corynebacterium sp. KPL1859 [AXLU]
117647
117735
+
Ser
CGA
[ENA]
¡û
>W141155250
AXLV01000001
Actinomycetota
Corynebacterium sp. KPL1857 [AXLV]
509659
509571
-
Ser
CGA
[ENA]
¡û
>W141155310
AXLW01000003
Actinomycetota
Corynebacterium sp. KPL1856 [AXLW]
4674
4762
+
Ser
CGA
[ENA]
¡û
>W141155380
AXLX01000024
Actinomycetota
Corynebacterium sp. KPL1855 [AXLX]
13476
13564
+
Ser
CGA
[ENA]
¡û
>W141155401
AXLY01000001
Actinomycetota
Corynebacterium sp. KPL1824 [AXLY]
300642
300730
+
Ser
CGA
[ENA]
¡û
>W141155480
AXLZ01000008
Actinomycetota
Corynebacterium sp. KPL1821 [AXLZ]
4674
4762
+
Ser
CGA
[ENA]
¡û
>W141155512
AXMA01000002
Actinomycetota
Corynebacterium sp. KPL1818 [AXMA]
415909
415997
+
Ser
CGA
[ENA]
¡û
>W141155575
AXMB01000004
Actinomycetota
Corynebacterium sp. KPL1817 [AXMB]
4803
4891
+
Ser
CGA
[ENA]
¡û
>W141155633
AXMC01000014
Actinomycetota
Corynebacterium sp. KPL1814 [AXMC]
117640
117728
+
Ser
CGA
[ENA]
¡û
>WENV181815293
OGTJ01002318
[OGTJ] human gut metagenome; fecal sample 1 from infant 9
28
116
+
Ser
CGA
[ENA]
¢þ
>WENV182629035
OJKR01001594
[OJKR] metagenome; surface
2572
2482
-
Ser
CGA
[ENA]
¢þ
>WENV182629354
OJKS01000108
[OJKS] metagenome; surface
9655
9567
-
Ser
CGA
[ENA]
¢þ
>WENV182636274
OJKZ01001965
[OJKZ] metagenome; surface
3923
4013
+
Ser
CGA
[ENA]
¢þ
>WENV182636296
OJKZ01002625
[OJKZ] metagenome; surface
2906
2994
+
Ser
CGA
[ENA]
¢þ
>WENV182640376
OJLB01005894
[OJLB] metagenome; surface
1155
1067
-
Ser
CGA
[ENA]
¢þ
>WENV182640729
OJLD01000150
[OJLD] metagenome; surface
6143
6055
-
Ser
CGA
[ENA]
¢þ
>WENV182640940
OJLE01000286
[OJLE] metagenome; surface
4634
4722
+
Ser
CGA
[ENA]
¢þ
>WENV182641942
OJLL01000049
[OJLL] metagenome; surface
32423
32513
+
Ser
CGA
[ENA]
¢þ
>WENV182642098
OJLL01000715
[OJLL] metagenome; surface
1210
1122
-
Ser
CGA
[ENA]
¢þ
>WENV182642775
OJLP01000533
[OJLP] metagenome; surface
1492
1580
+
Ser
CGA
[ENA]
¢þ
>WENV182643131
OJLS01001498
[OJLS] metagenome; surface
2752
2840
+
Ser
CGA
[ENA]
¢þ
>WENV182643360
OJLU01004179
[OJLU] metagenome; surface
855
943
+
Ser
CGA
[ENA]
¢þ
>WENV182643982
OJLW01004368
[OJLW] metagenome; surface
1014
1102
+
Ser
CGA
[ENA]
¢þ
>WENV182645472
OJLY01028237
[OJLY] metagenome; surface
733
643
-
Ser
CGA
[ENA]
¢þ
>WENV182645881
OJLZ01007242
[OJLZ] metagenome; surface
791
879
+
Ser
CGA
[ENA]
¢þ
>WENV182646297
OJMA01001143
[OJMA] metagenome; surface
3969
3881
-
Ser
CGA
[ENA]
¢þ
>WENV182646550
OJMB01064485
[OJMB] metagenome; surface
153
65
-
Ser
CGA
[ENA]
¢þ
>WENV182646630
OJMC01000172
[OJMC] metagenome; surface
8419
8331
-
Ser
CGA
[ENA]
¢þ
>WENV182671581
OJNM01000321
[OJNM] metagenome; surface
5216
5126
-
Ser
CGA
[ENA]
¢þ
>WENV182803959
OJUR01001015
[OJUR] human gut metagenome; human gut
992
1080
+
Ser
CGA
[ENA]
¢þ
>WENV182812002
OJXO01000119
[OJXO] human gut metagenome; human gut
4755
4843
+
Ser
CGA
[ENA]
¢þ
>WENV182828905
OKDK01001573
[OKDK] human gut metagenome; human gut
756
844
+
Ser
CGA
[ENA]
¢þ
>WENV182829119
OKDM01000092
[OKDM] human gut metagenome; human gut
4755
4843
+
Ser
CGA
[ENA]
¢þ
>WENV182833918
OKEX01000006
[OKEX] human gut metagenome; human gut
99794
99882
+
Ser
CGA
[ENA]
¢þ
>WENV182834019
OKEY01000176
[OKEY] human gut metagenome; human gut
3966
3878
-
Ser
CGA
[ENA]
¢þ
>WENV182855545
OKNB01000179
[OKNB] human gut metagenome; human gut
5289
5201
-
Ser
CGA
[ENA]
¢þ
>WENV183063497
OLIG01000432
[OLIG] metagenome; surface
433
521
+
Ser
CGA
[ENA]
¢þ
>WENV183090727
OLKE01000343
[OLKE] metagenome; surface
2955
3043
+
Ser
CGA
[ENA]
¢þ
>WENV170718811
LSQX01091279
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1358
1448
+
Ser
CGA
[ENA]
¢þ
>C181144740
CP027001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [CP027001]
139735
139823
+
Ser
CGA
-
¡û
>C181214823
LS483460
Actinomycetota
Corynebacterium minutissimum NCTC10288 [LS483460]
2565842
2565752
-
Ser
CGA
-
¡û
>W09113440
ABYQ01000023
Actinomycetota
Corynebacterium pseudogenitalium ATCC 33035 [ABYQ]
143
55
-
Ser
CGA
[ENA]
¡û
>C191207654
LR134339
Actinomycetota
Corynebacterium minutissimum NCTC10285 [LR134339]
367205
367295
+
Ser
CGA
-
¡û
>C191210937
LR134408
Actinomycetota
Corynebacterium segmentosum NCTC934 [LR134408]
162032
162120
+
Ser
CGA
-
¡û
>W09122393
ACGD01000017
Actinomycetota
Corynebacterium accolens ATCC 49725 [ACGD]
6769
6857
+
Ser
CGA
[ENA]
¡û
>W09127838
ACLH01000038
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
17123
17213
+
Ser
CGA
[ENA]
¡û
>W09135415
ACVP01000010
Actinomycetota
Corynebacterium tuberculostearicum SK141 [ACVP]
21442
21354
-
Ser
CGA
[ENA]
¡û
>C09102725
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
152946
153036
+
Ser
CGA
[Ensembl]
¡û
>W1911596668
PNHI01000014
Actinomycetota
Corynebacterium aurimucosum UMB1300 [PNHI]
27730
27820
+
Ser
CGA
[ENA]
¡û
>W1810155035
PJAF01000005
Actinomycetota
Corynebacterium mastitidis 16-1433 [PJAF]
31601
31691
+
Ser
CGA
[ENA]
¡û
>C151073106
CP010827
Actinomycetota
Corynebacterium singulare IBS B52218 [CP010827]
149837
149927
+
Ser
CGA
[Ensembl]
¡û
>C151079694
CP011311
Actinomycetota
Corynebacterium camporealensis DSM 44610 [CP011311]
139753
139841
+
Ser
CGA
[Ensembl]
¡û
>C151084429
CP011545
Actinomycetota
Corynebacterium testudinoris DSM 44614 [CP011545]
185656
185746
+
Ser
CGA
[Ensembl]
¡û
>W10127184
AEED01000041
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
6731
6819
+
Ser
CGA
[ENA]
¡û
>W1511356308
JRUB01000004
Actinomycetota
Corynebacterium camporealensis CIP 105508 [JRUB]
42479
42391
-
Ser
CGA
[ENA]
¡û
>W1511365534
JSEF01000004
Actinomycetota
Corynebacterium minutissimum ATCC 23348 [JSEF]
245045
245135
+
Ser
CGA
[ENA]
¡û
>W1511438576
JUMN01000135
Actinomycetota
Corynebacterium aurimucosum 945_CAUR [JUMN]
21053
21143
+
Ser
CGA
[ENA]
¡û
>W1511439772
JUOH01000001
Actinomycetota
Corynebacterium aurimucosum 911_CAUR [JUOH]
44226
44138
-
Ser
CGA
[ENA]
¡û
>W1511448419
JUZU01000018
Actinomycetota
Corynebacterium aurimucosum 620_CAUR [JUZU]
10095
10007
-
Ser
CGA
[ENA]
¡û
>W1511471094
JVXO01000035
Actinomycetota
Corynebacterium aurimucosum 1237_CAUR [JVXO]
10890
10978
+
Ser
CGA
[ENA]
¡û
>W1511472675
JVZP01000111
Actinomycetota
Cutibacterium acnes 119_PAVI [JVZP]
4558
4646
+
Ser
CGA
[ENA]
¡û
>W1511473143
JWAB01001464
Actinomycetota
Corynebacterium aurimucosum 118_CAUR [JWAB]
5910
5998
+
Ser
CGA
[ENA]
¡û
>W11134672
AEED01000041
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
6731
6819
+
Ser
CGA
[ENA]
¡û
>W1511585536
LAYQ01000020
Actinomycetota
Corynebacterium minutissimum 1941 [LAYQ]
51518
51428
-
Ser
CGA
[ENA]
¡û
>W1610068153
BCRC01000005
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
147306
147396
+
Ser
CGA
[ENA]
¡û
>W1710065526
BCRC01000005
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
147306
147396
+
Ser
CGA
[ENA]
¡û
>W1710563052
FOPJ01000017
Actinomycetota
Corynebacterium spheniscorum [FOPJ]
249
159
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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