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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307633 (115 seq.)
>W1710926321
LOEE01000041
Bacillota
Thermotalea metallivorans [LOEE]
58740
58665
-
Met
CAT
[ENA]
¡û
>W1710926353
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
319
394
+
Met
CAT
[ENA]
¡û
>W131065957
ANOE01000092
Bacillota
Clostridium tyrobutyricum UC7086 [ANOE]
37141
37216
+
Met
CAT
[ENA]
¡û
>W131187059
ARYO01000088
Bacillota
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 [ARYO]
16769
16694
-
Met
CAT
[ENA]
¡û
>W1711294056
LZZC01000029
Bacillota
Clostridium beijerinckii [LZZC]
32981
33056
+
Met
CAT
[ENA]
¡û
>W1711294058
LZZC01000029
Bacillota
Clostridium beijerinckii [LZZC]
33235
33310
+
Met
CAT
[ENA]
¡û
>W1711294126
LZZD01000048
Bacillota
Clostridium beijerinckii [LZZD]
23294
23369
+
Met
CAT
[ENA]
¡û
>W1711294128
LZZD01000048
Bacillota
Clostridium beijerinckii [LZZD]
23550
23625
+
Met
CAT
[ENA]
¡û
>W1711294173
LZZE01000046
Bacillota
Clostridium beijerinckii [LZZE]
23296
23371
+
Met
CAT
[ENA]
¡û
>W1711294175
LZZE01000046
Bacillota
Clostridium beijerinckii [LZZE]
23552
23627
+
Met
CAT
[ENA]
¡û
>W1711294266
LZZG01000096
Bacillota
Clostridium beijerinckii [LZZG]
79
4
-
Met
CAT
[ENA]
¡û
>W1711294301
LZZI01000006
Bacillota
Clostridium beijerinckii [LZZI]
94243
94318
+
Met
CAT
[ENA]
¡û
>W1711294303
LZZI01000006
Bacillota
Clostridium beijerinckii [LZZI]
94499
94574
+
Met
CAT
[ENA]
¡û
>W1711294508
LZZM01000032
Bacillota
Clostridium puniceum [LZZM]
21128
21053
-
Met
CAT
[ENA]
¡û
>W1711294511
LZZM01000032
Bacillota
Clostridium puniceum [LZZM]
20853
20778
-
Met
CAT
[ENA]
¡û
>W1711294514
LZZM01000032
Bacillota
Clostridium puniceum [LZZM]
20578
20503
-
Met
CAT
[ENA]
¡û
>W131224138
AUCO01000022
Bacillota
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 [AUCO]
17625
17550
-
Met
CAT
[ENA]
¡û
>W131224141
AUCO01000022
Bacillota
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 [AUCO]
17345
17270
-
Met
CAT
[ENA]
¡û
>W131001780
AGYK01000025
Bacillota
Clostridium butyricum 60E.3 [AGYK]
21578
21503
-
Met
CAT
[ENA]
¡û
>W131110801
APKZ01000046
Bacillota
Clostridium butyricum DKU-01 [APKZ]
22307
22232
-
Met
CAT
[ENA]
¡û
>W131156841
AQQG01000024
Bacillota
Clostridium diolis DSM 15410 [AQQG]
20389
20314
-
Met
CAT
[ENA]
¡û
>W131156843
AQQG01000024
Bacillota
Clostridium diolis DSM 15410 [AQQG]
20135
20060
-
Met
CAT
[ENA]
¡û
>W1712096568
NHZR01000014
Bacillota
Clostridium diolis [NHZR]
20443
20368
-
Met
CAT
[ENA]
¡û
>W1712096570
NHZR01000014
Bacillota
Clostridium diolis [NHZR]
20189
20114
-
Met
CAT
[ENA]
¡û
>C005045
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
122525
122600
+
Met
CAT
[Ensembl]
¡û
>C005047
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
122781
122856
+
Met
CAT
[Ensembl]
¡û
>w011474
AALO01000014
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
14514
14437
-
Met
CAT
[ENA]
¡û
>w011472
AALO01000014
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
14770
14693
-
Met
CAT
[ENA]
¡û
>C171021783
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
268879
268804
-
Met
CAT
-
¡û
>C171045806
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
123470
123545
+
Met
CAT
-
¡û
>C171045808
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
123726
123801
+
Met
CAT
-
¡û
>C171047528
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
140623
140698
+
Met
CAT
-
¡û
>C171130178
LT635475
Bacillota
Ezakiella massiliensis Marseille-P2951 [LT635475]
3233
3308
+
Met
CAT
-
¡û
>WENV180159443
OAVB01002685
[OAVB] human gut metagenome; faeces
3810
3735
-
fMet
CAT
[ENA]
¢þ
>WENV180190530
OAWZ01012772
[OAWZ] human gut metagenome; faeces
33
108
+
fMet
CAT
[ENA]
¢þ
>WENV180232482
OBCO01000555
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
246
321
+
fMet
CAT
[ENA]
¢þ
>WENV180233409
OBCP01000495
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
246
321
+
fMet
CAT
[ENA]
¢þ
>WENV180278373
OBHX01003779
[OBHX] metagenome; feces
10421
10346
-
fMet
CAT
[ENA]
¢þ
>WENV180347888
OBLO01001724
[OBLO] metagenome; feces
417
342
-
fMet
CAT
[ENA]
¢þ
>WENV180431310
OBWG01015141
[OBWG] human gut metagenome; faeces
590
665
+
fMet
CAT
[ENA]
¢þ
>WENV180569830
OCLR01000523
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
14929
15004
+
fMet
CAT
[ENA]
¢þ
>WENV180571530
OCLT01000155
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
107895
107970
+
fMet
CAT
[ENA]
¢þ
>WENV180571532
OCLT01000155
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
108151
108226
+
fMet
CAT
[ENA]
¢þ
>WENV180571534
OCLT01000155
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
108407
108482
+
fMet
CAT
[ENA]
¢þ
>WENV180574067
OCLW01000562
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
112
187
+
fMet
CAT
[ENA]
¢þ
>WENV180574069
OCLW01000562
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
368
443
+
fMet
CAT
[ENA]
¢þ
>WENV180639833
OCRL01000153
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
19664
19589
-
fMet
CAT
[ENA]
¢þ
>WENV180640758
OCRM01000155
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
107619
107694
+
fMet
CAT
[ENA]
¢þ
>WENV180640760
OCRM01000155
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
107875
107950
+
fMet
CAT
[ENA]
¢þ
>WENV181407323
OGCG01017417
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1565
1640
+
fMet
CAT
[ENA]
¢þ
>WENV181805797
OGSJ01000568
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
20776
20701
-
fMet
CAT
[ENA]
¢þ
>WENV181807866
OGSQ01000466
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
14704
14629
-
fMet
CAT
[ENA]
¢þ
>WENV181808570
OGSS01000260
[OGSS] human gut metagenome; faeces
49221
49146
-
fMet
CAT
[ENA]
¢þ
>WENV181809560
OGST01000497
[OGST] human gut metagenome; fecal sample 7 from infant 6
20913
20838
-
fMet
CAT
[ENA]
¢þ
>WENV181810547
OGSV01000218
[OGSV] human gut metagenome; fecal sample 4 from infant 3
21132
21057
-
fMet
CAT
[ENA]
¢þ
>WENV181811310
OGSY01000648
[OGSY] human gut metagenome; fecal sample 5 from infant 8
14360
14285
-
fMet
CAT
[ENA]
¢þ
>WENV181813711
OGTD01000260
[OGTD] human gut metagenome; fecal sample 1 from infant 3
20457
20382
-
fMet
CAT
[ENA]
¢þ
>WENV181815041
OGTI01000171
[OGTI] human gut metagenome; fecal sample 5 from infant 1
10961
10886
-
fMet
CAT
[ENA]
¢þ
>WENV181817546
OGTN01000525
[OGTN] human gut metagenome; fecal sample 5 from infant 4
14374
14299
-
fMet
CAT
[ENA]
¢þ
>WENV181818324
OGTS01000227
[OGTS] human gut metagenome; fecal sample 4 from infant 4
21092
21017
-
fMet
CAT
[ENA]
¢þ
>WENV181818615
OGTT01000419
[OGTT] human gut metagenome; fecal sample 6 from infant 8
14374
14299
-
fMet
CAT
[ENA]
¢þ
>W08001359
ABDT01000109
Bacillota
Clostridium butyricum 5521 [ABDT]
52815
52743
-
Met
CAT
[ENA]
¡û
>WENV182445099
OIKU01017063
[OIKU] human gut metagenome; human gut
41
115
+
fMet
CAT
[ENA]
¢þ
>WENV182516362
OIWN01042762
[OIWN] human gut metagenome; faeces
142
67
-
fMet
CAT
[ENA]
¢þ
>W141258639
CBXI010000029
Bacillota
Clostridium tyrobutyricum DIVETGP [CBXI]
36569
36644
+
Met
CAT
[ENA]
¡û
>W141259027
CBYK010000021
Bacillota
Clostridium butyricum [CBYK]
42259
42334
+
Met
CAT
[ENA]
¡û
>WENV182945029
OKVJ01007786
[OKVJ] human gut metagenome; human gut
1789
1714
-
fMet
CAT
[ENA]
¢þ
>WENV183067086
OLIL01007856
[OLIL] metagenome; faeces
308
233
-
fMet
CAT
[ENA]
¢þ
>WENV183713473
PDWI01139677
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
126
201
+
fMet
CAT
[ENA]
¢þ
>C191171147
CP039702
Bacillota
Clostridium butyricum [CP039702]
199469
199544
+
Met
CAT
-
¡û
>C191171272
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
1954537
1954612
+
Met
CAT
-
¡û
>W09132882
ACOM01000009
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
134572
134647
+
Met
CAT
[ENA]
¡û
>W1911497719
OCSL01000002
Bacillota
Ezakiella peruensis M6.X2 [OCSL]
628501
628426
-
Met
CAT
[ENA]
¡û
>W1911680774
QJKK01000007
Bacillota
Thermoflavimicrobium daqui FBKL4.011 [QJKK]
36019
36094
+
Met
CAT
[ENA]
¡û
>W1810147486
PIQP01000011
Bacillota
Clostridium beijerinckii WB [PIQP]
19602
19527
-
Met
CAT
[ENA]
¡û
>W1810147488
PIQP01000011
Bacillota
Clostridium beijerinckii WB [PIQP]
19346
19271
-
Met
CAT
[ENA]
¡û
>W1810250476
PQCR01000006
Bacillota
Clostridium sp. 2-1 [PQCR]
19835
19760
-
Met
CAT
[ENA]
¡û
>W1810250478
PQCR01000006
Bacillota
Clostridium sp. 2-1 [PQCR]
19579
19504
-
Met
CAT
[ENA]
¡û
>W1810250480
PQCR01000006
Bacillota
Clostridium sp. 2-1 [PQCR]
19323
19248
-
Met
CAT
[ENA]
¡û
>W1810271469
PRKY01000017
Bacillota
Clostridium diolis WST [PRKY]
81485
81560
+
Met
CAT
[ENA]
¡û
>W1810271472
PRKY01000018
Bacillota
Clostridium diolis WST [PRKY]
215
290
+
Met
CAT
[ENA]
¡û
>W1810271474
PRKY01000018
Bacillota
Clostridium diolis WST [PRKY]
471
546
+
Met
CAT
[ENA]
¡û
>C151088324
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
6065521
6065446
-
Met
CAT
-
¡û
>C151088326
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
6065267
6065192
-
Met
CAT
-
¡û
>W1510755110
CYSK01000009
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
51446
51371
-
Met
CAT
[ENA]
¡û
>W1510755113
CYSK01000009
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
51141
51066
-
Met
CAT
[ENA]
¡û
>W1511399424
JTER01000019
Bacillota
Clostridium tyrobutyricum FAM22552 [JTER]
574
499
-
Met
CAT
[ENA]
¡û
>W1511399427
JTER01000019
Bacillota
Clostridium tyrobutyricum FAM22552 [JTER]
294
219
-
Met
CAT
[ENA]
¡û
>W1511399442
JTER01000047
Bacillota
Clostridium tyrobutyricum FAM22552 [JTER]
108
183
+
Met
CAT
[ENA]
¡û
>W1511399445
JTER01000047
Bacillota
Clostridium tyrobutyricum FAM22552 [JTER]
388
463
+
Met
CAT
[ENA]
¡û
>W1511399491
JTES01000018
Bacillota
Clostridium tyrobutyricum FAM22553 [JTES]
17969
17894
-
Met
CAT
[ENA]
¡û
>W1511399494
JTES01000018
Bacillota
Clostridium tyrobutyricum FAM22553 [JTES]
17689
17614
-
Met
CAT
[ENA]
¡û
>W1511554820
JZWF01000029
Bacillota
Clostridium sp. IBUN125C [JZWF]
68
143
+
Met
CAT
[ENA]
¡û
>W1511554916
JZWG01000259
Bacillota
Clostridium sp. IBUN13A [JZWG]
4494
4569
+
Met
CAT
[ENA]
¡û
>C161054113
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
452777
452852
+
Met
CAT
-
¡û
>C161055866
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
140528
140603
+
Met
CAT
-
¡û
>C161067916
CP014170
Bacillota
Clostridium tyrobutyricum KCTC 5387 [CP014170]
2944160
2944085
-
Met
CAT
-
¡û
>C161067919
CP014170
Bacillota
Clostridium tyrobutyricum KCTC 5387 [CP014170]
2943880
2943805
-
Met
CAT
-
¡û
>C161076393
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
125316
125391
+
Met
CAT
-
¡û
>C161095644
CP016280
Bacillota
Clostridium tyrobutyricum W428 [CP016280]
2834079
2834004
-
Met
CAT
-
¡û
>C161095647
CP016280
Bacillota
Clostridium tyrobutyricum W428 [CP016280]
2833799
2833724
-
Met
CAT
-
¡û
>W121102365
AKWA01000055
Bacillota
Clostridium beijerinckii G117 [AKWA]
19602
19527
-
Met
CAT
[ENA]
¡û
>W121102367
AKWA01000055
Bacillota
Clostridium beijerinckii G117 [AKWA]
19346
19271
-
Met
CAT
[ENA]
¡û
>W1610041509
BASR01000355
Bacillota
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 [BASR]
867
942
+
Met
CAT
[ENA]
¡û
>W1610165190
FAXL01000035
Bacillota
Clostridium tyrobutyricum [FAXL]
17493
17418
-
Met
CAT
[ENA]
¡û
>C131012901
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
129797
129872
+
Met
CAT
[Ensembl]
¡û
>W1610627670
LIDW01000055
Bacillota
Clostridium butyricum [LIDW]
20712
20637
-
Met
CAT
[ENA]
¡û
>W1610783814
LOEE01000041
Bacillota
Thermotalea metallivorans [LOEE]
58740
58665
-
Met
CAT
[ENA]
¡û
>W1610783846
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
319
394
+
Met
CAT
[ENA]
¡û
>W1710166806
FAXL01000035
Bacillota
Clostridium tyrobutyricum [FAXL]
17493
17418
-
Met
CAT
[ENA]
¡û
>W1710586746
FQXL01000020
Bacillota
Clostridium magnum DSM 2767 [FQXL]
22886
22811
-
Met
CAT
[ENA]
¡û
>W1710586747
FQXL01000020
Bacillota
Clostridium magnum DSM 2767 [FQXL]
656
581
-
Met
CAT
[ENA]
¡û
>W1710586761
FQXL01000037
Bacillota
Clostridium magnum DSM 2767 [FQXL]
805
730
-
Met
CAT
[ENA]
¡û
>W1710586790
FQXL01000056
Bacillota
Clostridium magnum DSM 2767 [FQXL]
550
475
-
Met
CAT
[ENA]
¡û
>W1710758797
LIDW01000055
Bacillota
Clostridium butyricum [LIDW]
20712
20637
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK