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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307654 (31 seq.)
>W1711138973
LVEO01000013
Bacteroidota
Flavobacterium glycines [LVEO]
636517
636593
+
Ala
GGC
[ENA]
¡û
>W131225251
AUDK01000009
Bacteroidota
Flavobacterium daejeonense DSM 17708 [AUDK]
40950
40874
-
Ala
GGC
[ENA]
¡û
>W1711713327
MTCZ01000003
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
21761
21685
-
Ala
GGC
[ENA]
¡û
>C171053218
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
2216566
2216490
-
Ala
GGC
-
¡û
>C171067650
CP017774
Bacteroidota
Flavobacterium commune PK15 [CP017774]
1850620
1850544
-
Ala
GGC
-
¡û
>WENV180039349
LLBY010055639
[LLBY] soil metagenome; soil from tomato rhizosphere
1705
1779
+
Ala
GGC
[ENA]
¢þ
>WENV180039523
LLBY010085970
[LLBY] soil metagenome; soil from tomato rhizosphere
1639
1713
+
Ala
GGC
[ENA]
¢þ
>WENV180041135
LLBZ010050043
[LLBZ] soil metagenome; soil from tomato rhizosphere
11903
11977
+
Ala
GGC
[ENA]
¢þ
>WENV181856542
OGWN01003210
[OGWN] freshwater metagenome; freshwater
510
584
+
Ala
GGC
[ENA]
¢þ
>WENV183729918
PJTR01000192
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
26272
26198
-
Ala
GGC
[ENA]
¢þ
>WENV183730639
PJTS01000240
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
16526
16452
-
Ala
GGC
[ENA]
¢þ
>WENV183731601
PJTT01000053
[PJTT] soil metagenome; Soil (2) enriched on wood chips
129680
129754
+
Ala
GGC
[ENA]
¢þ
>ENV08001308
ABMW01021538
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
121
45
-
Ala
GGC
[ENA]
¡û
>C181176607
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
635897
635971
+
Ala
GGC
-
¡û
>C191025456
CP023642
Bacteroidota
Flavobacterium anhuiense M168 [CP023642]
4970196
4970270
+
Ala
GGC
-
¡û
>W141726682
JNCA01000016
Bacteroidota
Flavobacterium seoulense EM1321 [JNCA]
112898
112974
+
Ala
GGC
[ENA]
¡û
>C141012311
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
1243802
1243878
+
Ala
GGC
-
¡û
>W1911533976
OLKH01000064
Bacteroidota
Flavobacterium columnare [OLKH]
76043
76117
+
Ala
GGC
[ENA]
¡û
>SRA1001380
SRR001064.55135
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
121
45
-
Ala
GGC
[SRA]
>W1810669709
QJRH01000067
Bacteroidota
Flavobacterium tistrianum GB 56.1 [QJRH]
176222
176148
-
Ala
GGC
[ENA]
¡û
>W1810669808
QJRJ01000077
Bacteroidota
Flavobacterium ginsenosidimutans THG 01 [QJRJ]
146912
146986
+
Ala
GGC
[ENA]
¡û
>W1810787301
QRDQ01000008
Bacteroidota
Flavobacterium cutihirudinis DSM 25795 [QRDQ]
125314
125388
+
Ala
GGC
[ENA]
¡û
>W121103518
AKZQ01000025
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
137692
137768
+
Ala
GGC
[ENA]
¡û
>W1610534926
JRLG01000013
Bacteroidota
Flavobacterium daejeonense [JRLG]
104309
104233
-
Ala
GGC
[ENA]
¡û
>W1610949981
LVEO01000013
Bacteroidota
Flavobacterium glycines [LVEO]
636517
636593
+
Ala
GGC
[ENA]
¡û
>W1710507254
FMVC01000008
Bacteroidota
Flavobacterium anhuiense [FMVC]
59877
59801
-
Ala
GGC
[ENA]
¡û
>W1710519198
FNEO01000001
Bacteroidota
Flavobacterium glycines [FNEO]
1062105
1062029
-
Ala
GGC
[ENA]
¡û
>W1710559011
FOMH01000007
Bacteroidota
Flavobacterium phragmitis [FOMH]
235656
235580
-
Ala
GGC
[ENA]
¡û
>W1710585102
FQWC01000003
Bacteroidota
Flavobacterium defluvii [FQWC]
520143
520067
-
Ala
GGC
[ENA]
¡û
>W1710588394
FQZI01000001
Bacteroidota
Flavobacterium terrae [FQZI]
111155
111231
+
Ala
GGC
[ENA]
¡û
>W1710637162
JRLG01000013
Bacteroidota
Flavobacterium daejeonense [JRLG]
104309
104233
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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