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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308056 (51 seq.)
>W1711055480
LRUW01000050
Campylobacterota
Aliarcobacter skirrowii [LRUW]
352
276
-
His
GTG
[ENA]
¡û
>W1711055510
LRUX01000036
Campylobacterota
Aliarcobacter skirrowii [LRUX]
31434
31510
+
His
GTG
[ENA]
¡û
>W1711055526
LRUY01000069
Campylobacterota
Aliarcobacter skirrowii [LRUY]
31436
31512
+
His
GTG
[ENA]
¡û
>W1711055556
LRUZ01000024
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
408
332
-
His
GTG
[ENA]
¡û
>WENV170012741
ASRO01000003
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31434
31358
-
His
GTG
[ENA]
¡û
>WENV170012843
ASRP01000866
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1520
1444
-
His
GTG
[ENA]
¡û
>WENV170012925
ASRQ01000008
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31434
31358
-
His
GTG
[ENA]
¡û
>WENV170013012
ASRR01000022
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
31424
31348
-
His
GTG
[ENA]
¡û
>WENV170014435
AYRG01000076
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
31434
31358
-
His
GTG
[ENA]
¡û
>WENV170726658
LSQX01389012
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1910
1834
-
His
GTG
[ENA]
¡û
>C181199828
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
210047
209971
-
His
GTG
-
¡û
>C191084525
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
165242
165318
+
His
GTG
-
¡û
>C191122806
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
155802
155878
+
His
GTG
-
¡û
>W1911426131
NXIC01000001
Campylobacterota
Arcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
529529
529453
-
His
GTG
[ENA]
¡û
>W1911426422
NXII01000006
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
107110
107186
+
His
GTG
[ENA]
¡û
>W1911426460
NXIJ01000002
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
874
798
-
His
GTG
[ENA]
¡û
>W1911576059
PDJS01000001
Campylobacterota
Arcobacter trophiarum CECT 7650 [PDJS]
12880
12804
-
His
GTG
[ENA]
¡û
>W1911576094
PDJT01000011
Campylobacterota
Arcobacter skirrowii F28 [PDJT]
7274
7350
+
His
GTG
[ENA]
¡û
>W1911576394
PDJZ01000003
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
263395
263471
+
His
GTG
[ENA]
¡û
>W1911576463
PDKB01000026
Campylobacterota
Arcobacter sp. CECT 9230 [PDKB]
874
798
-
His
GTG
[ENA]
¡û
>W1911576529
PDKD01000001
Campylobacterota
Arcobacter trophiarum LMG 25534 [PDKD]
296308
296384
+
His
GTG
[ENA]
¡û
>W1911576698
PDKH01000001
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
504624
504548
-
His
GTG
[ENA]
¡û
>W1911576737
PDKI01000001
Campylobacterota
Arcobacter sp. CECT 9188 [PDKI]
166270
166346
+
His
GTG
[ENA]
¡û
>W1911748906
QWFD01000001
Campylobacterota
Aliiarcobacter skirrowii 17-1208-1 [QWFD]
385992
385916
-
His
GTG
[ENA]
¡û
>W1911748948
QWFE01000001
Campylobacterota
Aliiarcobacter skirrowii 17-1206-2 [QWFE]
385992
385916
-
His
GTG
[ENA]
¡û
>W1810058606
PDKA01000010
Campylobacterota
Arcobacter sp. FW59 [PDKA]
27551
27627
+
His
GTG
[ENA]
¡û
>W1810584098
QEYG01000019
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
26128
26204
+
His
GTG
[ENA]
¡û
>W1810584128
QEYH01000001
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
178525
178601
+
His
GTG
[ENA]
¡û
>W1810584170
QEYI01000001
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
375492
375416
-
His
GTG
[ENA]
¡û
>W2011144989
NXIC01000001
Campylobacterota
Arcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
529529
529453
-
His
GTG
[ENA]
¡û
>W2011145280
NXII01000006
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
107110
107186
+
His
GTG
[ENA]
¡û
>W2011145318
NXIJ01000002
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
874
798
-
His
GTG
[ENA]
¡û
>W2011185873
PDJS01000001
Campylobacterota
Arcobacter trophiarum CECT 7650 [PDJS]
12880
12804
-
His
GTG
[ENA]
¡û
>W2011185908
PDJT01000011
Campylobacterota
Arcobacter skirrowii F28 [PDJT]
7274
7350
+
His
GTG
[ENA]
¡û
>W2011186208
PDJZ01000003
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
263395
263471
+
His
GTG
[ENA]
¡û
>W2011186277
PDKB01000026
Campylobacterota
Arcobacter sp. CECT 9230 [PDKB]
874
798
-
His
GTG
[ENA]
¡û
>W2011186343
PDKD01000001
Campylobacterota
Arcobacter trophiarum LMG 25534 [PDKD]
296308
296384
+
His
GTG
[ENA]
¡û
>W2011186512
PDKH01000001
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
504624
504548
-
His
GTG
[ENA]
¡û
>W2011186551
PDKI01000001
Campylobacterota
Arcobacter sp. CECT 9188 [PDKI]
166270
166346
+
His
GTG
[ENA]
¡û
>W2011317835
QWFD01000001
Campylobacterota
Aliiarcobacter skirrowii 17-1208-1 [QWFD]
385992
385916
-
His
GTG
[ENA]
¡û
>W2011317877
QWFE01000001
Campylobacterota
Aliiarcobacter skirrowii 17-1206-2 [QWFE]
385992
385916
-
His
GTG
[ENA]
¡û
>W2011850188
UIGC01000001
Campylobacterota
Arcobacter skirrowii NCTC12713 [UIGC]
53727
53651
-
His
GTG
[ENA]
¡û
>W2012217501
VZOH01000001
Campylobacterota
Arcobacter skirrowii CCUG 10374 [VZOH]
529529
529453
-
His
GTG
[ENA]
¡û
>W2110201373
JACDJG010000027
Campylobacterota
Aliarcobacter lanthieri R-75363 [JACDJG]
6721
6645
-
His
GTG
[ENA]
¡û
>W2110328492
JADKPZ010000001
Campylobacterota
Arcobacter sp. R-73987 [JADKPZ]
33034
32958
-
His
GTG
[ENA]
¡û
>C241034696
CP030944
Campylobacterota
Arcobacter aquimarinus W63 [CP030944]
209911
209987
+
His
GTG
-
¡û
>C241161458
CP053833
Campylobacterota
Arcobacter cloacae LMG 26153 [CP053833]
193395
193471
+
His
GTG
-
¡û
>W1610896526
LRUW01000050
Campylobacterota
Aliarcobacter skirrowii [LRUW]
352
276
-
His
GTG
[ENA]
¡û
>W1610896556
LRUX01000036
Campylobacterota
Aliarcobacter skirrowii [LRUX]
31434
31510
+
His
GTG
[ENA]
¡û
>W1610896572
LRUY01000069
Campylobacterota
Aliarcobacter skirrowii [LRUY]
31436
31512
+
His
GTG
[ENA]
¡û
>W1610896602
LRUZ01000024
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
408
332
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK