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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308950 (67 seq.)
>W1711385736
MEEN01000026
Bacteroidota
Niastella sp. SCN 39-18 [MEEN]
50428
50354
-
Asn
GTT
[ENA]
¡û
>W1711503757
MKTX01000001
Bacteroidota
Sphingobacteriales bacterium 39-19 [MKTX]
361350
361276
-
Asn
GTT
[ENA]
¡û
>W1711715375
MTFE01000010
Bacteroidota
Cnuella takakiae [MTFE]
5461292
5461368
+
Asn
GTT
[ENA]
¡û
>WENV180002321
FLNY01000883
[FLNY] bioreactor metagenome; Moose rumen
2735
2811
+
Asn
GTT
[ENA]
¡û
>WENV180002547
FLNY01002439
[FLNY] bioreactor metagenome; Moose rumen
49448
49371
-
Asn
GTT
[ENA]
¡û
>WENV180664931
OCVV011174178
[OCVV] gut metagenome; gut
603
677
+
Asn
GTT
[ENA]
¡û
>WENV180664932
OCVV011174178
[OCVV] gut metagenome; gut
603
677
+
Asn
GTT
[ENA]
¡û
>WENV180684247
OCVV012855535
[OCVV] gut metagenome; gut
1734
1808
+
Asn
GTT
[ENA]
¡û
>WENV180684249
OCVV012855535
[OCVV] gut metagenome; gut
1734
1808
+
Asn
GTT
[ENA]
¡û
>WENV180693265
OCZS011116253
[OCZS] soil metagenome; soil
173
99
-
Asn
GTT
[ENA]
¡û
>WENV181164647
OEIR01279114
[OEIR] soil metagenome; soil
234
160
-
Asn
GTT
[ENA]
¡û
>WENV181172846
OEIV011022541
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
149
223
+
Asn
GTT
[ENA]
¡û
>WENV181190099
OEOF01487690
[OEOF] activated sludge metagenome; Activated Sludge
59
135
+
Asn
GTT
[ENA]
¡û
>WENV181308255
OFIS01001632
[OFIS] sludge metagenome; sludge
1165
1091
-
Asn
GTT
[ENA]
¡û
>WENV181402408
OFTY01001168
[OFTY] sludge metagenome; sludge
10490
10416
-
Asn
GTT
[ENA]
¡û
>WENV183092965
OLLP01000642
[OLLP] soil metagenome; soil
7284
7358
+
Asn
GTT
[ENA]
¡û
>WENV170551253
CXWJ01002271
[CXWJ] wastewater metagenome; activated sludge
1598
1524
-
Asn
GTT
[ENA]
¡û
>WENV170650252
JRYD01032257
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
4111
4187
+
Asn
GTT
[ENA]
¡û
>WENV170726971
LSQX01400295
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
248
322
+
Asn
GTT
[ENA]
¡û
>WENV170775656
LXOW01072742
[LXOW] bovine gut metagenome; Cow rumen
537
463
-
Asn
GTT
[ENA]
¡û
>WENV170775657
LXOW01072808
[LXOW] bovine gut metagenome; Cow rumen
346
270
-
Asn
GTT
[ENA]
¡û
>WENV170775848
LXOW01096951
[LXOW] bovine gut metagenome; Cow rumen
570
494
-
Asn
GTT
[ENA]
¡û
>WENV170776286
LXOW01149545
[LXOW] bovine gut metagenome; Cow rumen
680
756
+
Asn
GTT
[ENA]
¡û
>WENV170777907
LXOW01336810
[LXOW] bovine gut metagenome; Cow rumen
1360
1436
+
Asn
GTT
[ENA]
¡û
>WENV170778722
LXOW01429067
[LXOW] bovine gut metagenome; Cow rumen
4927
5001
+
Asn
GTT
[ENA]
¡û
>WENV170985190
MWVW01037960
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
623
549
-
Asn
GTT
[ENA]
¡û
>WENV170985559
MWVW01148274
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
98
24
-
Asn
GTT
[ENA]
¡û
>WENV170985861
MWVX01005125
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
2401
2475
+
Asn
GTT
[ENA]
¡û
>WENV170986623
MWVX01057567
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
351
277
-
Asn
GTT
[ENA]
¡û
>WENV170988322
MWVX01456012
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
138
62
-
Asn
GTT
[ENA]
¡û
>WENV170988705
MWVY01000295
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
2663
2589
-
Asn
GTT
[ENA]
¡û
>WENV170990390
MWWA01003821
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
2246
2322
+
Asn
GTT
[ENA]
¡û
>WENV170991432
MWWA01195057
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
83
9
-
Asn
GTT
[ENA]
¡û
>WENV170992212
MWWB01006171
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
320
244
-
Asn
GTT
[ENA]
¡û
>WENV170992346
MWWB01018370
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
18
92
+
Asn
GTT
[ENA]
¡û
>WENV170993308
MWWB01256711
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
375
299
-
Asn
GTT
[ENA]
¡û
>WENV170996918
MWWG01005557
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
188
114
-
Asn
GTT
[ENA]
¡û
>C181090250
CP023777
Bacteroidota
Chitinophaga caeni 13 [CP023777]
1035398
1035324
-
Asn
GTT
-
¡û
>W1911775053
QXMH01000001
Bacteroidota
Chitinophaga sp. T22 [QXMH]
1661259
1661185
-
Asn
GTT
[ENA]
¡û
>W1911787367
QXZY01000015
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
230078
230152
+
Asn
GTT
[ENA]
¡û
>W1810586492
QFFK01000002
Bacteroidota
Chitinophaga deserti XJ-2 [QFFK]
67303
67377
+
Asn
GTT
[ENA]
¡û
>W1810693526
QLLL01000007
Bacteroidota
Chitinophaga skermanii DSM 23857 [QLLL]
187726
187800
+
Asn
GTT
[ENA]
¡û
>W2010106762
BKAU01000001
Bacteroidota
Chitinophaga cymbidii NBRC 109752 [BKAU]
1576709
1576635
-
Asn
GTT
[ENA]
¡û
>W2010739290
JACJGO010000016
Bacteroidota
Flavisolibacter sp. BT320 [JACJGO]
123213
123287
+
Asn
GTT
[ENA]
¡û
>W2010739291
JACJGO010000016
Bacteroidota
Flavisolibacter sp. BT320 [JACJGO]
123320
123395
+
Asn
GTT
[ENA]
¡û
>W2011328610
QXMH01000001
Bacteroidota
Chitinophaga sp. T22 [QXMH]
1661259
1661185
-
Asn
GTT
[ENA]
¡û
>W2011338718
QXZY01000015
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
230078
230152
+
Asn
GTT
[ENA]
¡û
>W2011455692
RMBX01000015
Bacteroidota
Chitinophaga barathri YLT18 [RMBX]
230078
230152
+
Asn
GTT
[ENA]
¡û
>W2011458244
RPDH01000001
Bacteroidota
Chitinophaga sp. ZY74 [RPDH]
1983787
1983713
-
Asn
GTT
[ENA]
¡û
>W2011497087
RXLO01000004
Bacteroidota
Chitinophaga rhizosphaerae T16R-86 [RXLO]
391557
391631
+
Asn
GTT
[ENA]
¡û
>W2011615602
SJXL01000001
Bacteroidota
Arachidicoccus sp. B3-10 [SJXL]
308200
308274
+
Asn
GTT
[ENA]
¡û
>W2011615623
SJXL01000001
Bacteroidota
Arachidicoccus sp. B3-10 [SJXL]
4581008
4580934
-
Asn
GTT
[ENA]
¡û
>W2110492981
JAFEWC010000002
Bacteroidota
Segetibacter sp. SYSU D00508 [JAFEWC]
134696
134622
-
Asn
GTT
[ENA]
¡û
>W2110575294
JAGTXB010000001
Bacteroidota
Chitinophaga sp. 2R12 [JAGTXB]
418696
418770
+
Asn
GTT
[ENA]
¡û
>W2110641850
JAHSPG010000008
Bacteroidota
Parasegetibacter sp. MAH-26 [JAHSPG]
21052
20978
-
Asn
GTT
[ENA]
¡û
>W2110668913
JAICCF010000003
Bacteroidota
Chitinophaga sp. B61 [JAICCF]
496157
496083
-
Asn
GTT
[ENA]
¡û
>C201121023
CP043006
Bacteroidota
Chitinophaga sp. XS-30 [CP043006]
816925
816851
-
Asn
GTT
-
¡û
>C201139837
CP044016
Bacteroidota
Arachidicoccus sp. B3-10 [CP044016]
308200
308274
+
Asn
GTT
-
¡û
>C201139858
CP044016
Bacteroidota
Arachidicoccus sp. B3-10 [CP044016]
4581008
4580934
-
Asn
GTT
-
¡û
>C201307652
LR632928
Bacteroidota
Chitinophaga pinensis [LR632928, LR632929, LR632930]
5193650
5193724
+
Asn
GTT
-
¡û
>C201307705
LR632929
Bacteroidota
Chitinophaga pinensis [LR632928, LR632929, LR632930]
5193886
5193960
+
Asn
GTT
-
¡û
>C201307784
LR632930
Bacteroidota
Chitinophaga pinensis [LR632928, LR632929, LR632930]
1153373
1153299
-
Asn
GTT
-
¡û
>C211401705
CP083388
Bacteroidota
Ferruginibacter sp. KIS38-8 [CP083388]
3686033
3685959
-
Asn
GTT
-
¡û
>C161034871
CP011390
Bacteroidota
Flavisolibacter tropicus LCS9 [CP011390]
3186519
3186593
+
Asn
GTT
[Ensembl]
¡û
>WENV080055
AATO01002429
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1551
1629
+
Asn
GTT
[ENA]
>W1710583122
FQUO01000001
Bacteroidota
Cnuella takakiae [FQUO]
96356
96432
+
Asn
GTT
[ENA]
¡û
>W1710594128
FSRA01000002
Bacteroidota
Chitinophaga niabensis [FSRA]
1219628
1219702
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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