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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309432 (68 seq.)
>W1710785355
LJHU01000018
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
124347
124271
-
Met
CAT
[ENA]
¡û
>W1710860768
LMDD01000006
Alphaproteobacteria
Caulobacter sp. Root342 [LMDD]
810455
810531
+
Met
CAT
[ENA]
¡û
>W1710860874
LMDF01000006
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
321366
321290
-
Met
CAT
[ENA]
¡û
>W1710863471
LMFD01000011
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
35128
35204
+
Met
CAT
[ENA]
¡û
>W1710864131
LMFQ01000012
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
36220
36296
+
Met
CAT
[ENA]
¡û
>W1710864474
LMFX01000006
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
92381
92305
-
Met
CAT
[ENA]
¡û
>W1710865969
LMHC01000010
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
9737
9661
-
Met
CAT
[ENA]
¡û
>W1710866026
LMHD01000026
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
190992
190916
-
Met
CAT
[ENA]
¡û
>W1710866770
LMHT01000007
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
221076
221152
+
Met
CAT
[ENA]
¡û
>W1710899427
LNIY01000082
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
16782
16706
-
Met
CAT
[ENA]
¡û
>W131160065
AQWG01000310
Alphaproteobacteria
Caulobacter sp. JGI 0001013-O16 [AQWG]
19992
20068
+
Met
CAT
[ENA]
¡û
>W131160825
AQWZ01000324
Alphaproteobacteria
Caulobacter sp. JGI 0001010-J14 [AQWZ]
80443
80519
+
Met
CAT
[ENA]
¡û
>W131226702
AUEO01000029
Alphaproteobacteria
Caulobacter sp. URHA0033 [AUEO]
40118
40042
-
Met
CAT
[ENA]
¡û
>w018494
AATH01000002
Alphaproteobacteria
Caulobacter sp. K31 [AATH]
375129
375056
-
Met
CAT
[ENA]
¡û
>WENV180015980
FSTT01000391
[FSTT] metagenome; soil
14
90
+
Met
CAT
[ENA]
¡û
>WENV180022036
FTFM01000148
[FTFM] metagenome; soil
4070
4146
+
Met
CAT
[ENA]
¡û
>WENV180023395
FTHV01011376
[FTHV] metagenome; soil
108
184
+
Met
CAT
[ENA]
¡û
>WENV180023530
FTHY01011609
[FTHY] metagenome; soil
108
184
+
Met
CAT
[ENA]
¡û
>WENV180033279
FTKF01248467
[FTKF] metagenome; soil
248
324
+
Met
CAT
[ENA]
¡û
>WENV180033785
FTKL01187062
[FTKL] metagenome; soil
66
142
+
Met
CAT
[ENA]
¡û
>WENV180033823
FTKL01378320
[FTKL] metagenome; soil
110
186
+
Met
CAT
[ENA]
¡û
>C08002335
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
887470
887546
+
Met
CAT
[Ensembl]
¡û
>WENV183730330
PJTR01022970
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
79
155
+
Met
CAT
[ENA]
¡û
>WENV183731848
PJTT01000263
[PJTT] soil metagenome; Soil (2) enriched on wood chips
19569
19493
-
Met
CAT
[ENA]
¡û
>WENV183743271
PJUJ01000294
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
10249
10325
+
Met
CAT
[ENA]
¡û
>WENV183743285
PJUJ01000327
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
9212
9288
+
Met
CAT
[ENA]
¡û
>WENV183744014
PJUK01000133
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
5810
5734
-
Met
CAT
[ENA]
¡û
>WENV183744352
PJUK01010031
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
763
687
-
Met
CAT
[ENA]
¡û
>WENV183744852
PJUL01000425
[PJUL] feces metagenome; Chicken feces enriched on filter paper
10249
10325
+
Met
CAT
[ENA]
¡û
>WENV183744877
PJUL01000498
[PJUL] feces metagenome; Chicken feces enriched on filter paper
9212
9288
+
Met
CAT
[ENA]
¡û
>WENV170720910
LSQX01171035
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1413
1489
+
Met
CAT
[ENA]
¡û
>C191040426
CP026100
Alphaproteobacteria
Caulobacter flavus RHGG3 [CP026100]
5621797
5621721
-
Met
CAT
-
¡û
>C191159606
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
123750
123826
+
Met
CAT
-
¡û
>W141731237
JNIX01000011
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
243709
243785
+
Met
CAT
[ENA]
¡û
>W141779495
JONW01000008
Alphaproteobacteria
Caulobacter sp. UNC358MFTsu5.1 [JONW]
472912
472836
-
Met
CAT
[ENA]
¡û
>W141815956
JQJN01000005
Alphaproteobacteria
Caulobacter henricii [JQJN]
33107
33183
+
Met
CAT
[ENA]
¡û
>W141816041
JQJP01000001
Alphaproteobacteria
Caulobacter henricii [JQJP]
509494
509418
-
Met
CAT
[ENA]
¡û
>W1810069316
PEBF01000001
Alphaproteobacteria
Caulobacter sp. FWC2 [PEBF]
4056044
4056120
+
Met
CAT
[ENA]
¡û
>W1810073545
PEGH01000009
Alphaproteobacteria
Caulobacter sp. BP25 [PEGH]
174371
174447
+
Met
CAT
[ENA]
¡û
>W1810177603
PJRQ01000043
Alphaproteobacteria
Caulobacter flavus CGMCC1 15093 [PJRQ]
32301
32377
+
Met
CAT
[ENA]
¡û
>W1810177700
PJRS01000039
Alphaproteobacteria
Caulobacter zeae 410 [PJRS]
44706
44630
-
Met
CAT
[ENA]
¡û
>W1810543660
QDKO01000032
Alphaproteobacteria
Caulobacter radicis 695 [QDKO]
356934
357010
+
Met
CAT
[ENA]
¡û
>W1810543702
QDKP01000040
Alphaproteobacteria
Caulobacter radicis 736 [QDKP]
43680
43604
-
Met
CAT
[ENA]
¡û
>W1810543731
QDKQ01000026
Alphaproteobacteria
Caulobacter endophyticus 774 [QDKQ]
68968
68892
-
Met
CAT
[ENA]
¡û
>W1810625699
QHJY01000101
Alphaproteobacteria
Caulobacter sp. D5 [QHJY]
12303
12227
-
Met
CAT
[ENA]
¡û
>W1810625748
QHJZ01000284
Alphaproteobacteria
Caulobacter sp. D4A [QHJZ]
7904
7828
-
Met
CAT
[ENA]
¡û
>W2010493270
JAAKGT010000003
Alphaproteobacteria
Caulobacter sp. 602-2 [JAAKGT]
43206
43130
-
Met
CAT
[ENA]
¡û
>W2011626132
SLZL01000003
Alphaproteobacteria
Caulobacter sp. BK020 [SLZL]
31339
31415
+
Met
CAT
[ENA]
¡û
>W2011674459
SPQX01000007
Alphaproteobacteria
Brevundimonas sp. S30B [SPQX]
133102
133178
+
Met
CAT
[ENA]
¡û
>W2012047522
VIVU01000020
Alphaproteobacteria
Caulobacter henricii 536 [VIVU]
50004
49928
-
Met
CAT
[ENA]
¡û
>W2012048395
VIWK01000020
Alphaproteobacteria
Caulobacter rhizosphaerae 3260 [VIWK]
50004
49928
-
Met
CAT
[ENA]
¡û
>W2110394100
JADWOX010000001
Alphaproteobacteria
Caulobacter hibisci KACC 18849 [JADWOX]
221626
221702
+
Met
CAT
[ENA]
¡û
>C231365732
CP096040
Alphaproteobacteria
Caulobacter segnis RL271 [CP096040]
1406560
1406484
-
Met
CAT
-
¡û
>C241131720
CP048815
Alphaproteobacteria
Caulobacter rhizosphaerae KCTC 52515 [CP048815]
4794747
4794671
-
Met
CAT
-
¡û
>W2310010507
BMLD01000016
Alphaproteobacteria
Caulobacter rhizosphaerae CGMCC 1.15915 [BMLD]
46064
45988
-
Met
CAT
[ENA]
¡û
>W1511432264
JUGJ01000012
Alphaproteobacteria
Caulobacter sp. OV484 [JUGJ]
320010
319934
-
Met
CAT
[ENA]
¡û
>W121086757
AKKF01000129
Alphaproteobacteria
Caulobacter sp. AP07 [AKKF]
24453
24529
+
Met
CAT
[ENA]
¡û
>W1610649161
LJHU01000018
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
124347
124271
-
Met
CAT
[ENA]
¡û
>W1610723114
LMDD01000006
Alphaproteobacteria
Caulobacter sp. Root342 [LMDD]
810455
810531
+
Met
CAT
[ENA]
¡û
>W1610723220
LMDF01000006
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
321366
321290
-
Met
CAT
[ENA]
¡û
>W1610725817
LMFD01000011
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
35128
35204
+
Met
CAT
[ENA]
¡û
>W1610726477
LMFQ01000012
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
36220
36296
+
Met
CAT
[ENA]
¡û
>W1610726820
LMFX01000006
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
92381
92305
-
Met
CAT
[ENA]
¡û
>W1610728315
LMHC01000010
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
9737
9661
-
Met
CAT
[ENA]
¡û
>W1610728372
LMHD01000026
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
190992
190916
-
Met
CAT
[ENA]
¡û
>W1610729116
LMHT01000007
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
221076
221152
+
Met
CAT
[ENA]
¡û
>W1610759830
LNIY01000082
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
16782
16706
-
Met
CAT
[ENA]
¡û
>W1710565855
FORN01000037
Alphaproteobacteria
Caulobacter sp. UNC279MFTsu5.1 [FORN]
30044
29968
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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