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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.311192 (58 seq.)
>W131232693
AUJL01000022
Bacillota
Clostridium cadaveris AGR2141 [AUJL]
584
659
+
Ala
TGC
[ENA]
¡û
>W131232722
AUJL01000041
Bacillota
Clostridium cadaveris AGR2141 [AUJL]
615
690
+
Ala
TGC
[ENA]
¡û
>C171077661
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
267240
267315
+
Ala
TGC
-
¡û
>C007097
AE015927
Bacillota
Clostridium tetani E88 Massachusetts [AE015927]
38326
38251
-
Ala
TGC
[Ensembl]
¡û
>w025885
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
2153369
2153446
+
Ala
TGC
[ENA]
¡û
>WENV180404020
OBRT01083356
[OBRT] human gut metagenome; ENVO:feces
103
28
-
Ala
TGC
[ENA]
¢þ
>WENV180625152
OCQJ01000916
[OCQJ] human gut metagenome; human gut
249
174
-
Ala
TGC
[ENA]
¢þ
>WENV180712651
ODFT01014820
[ODFT] human metagenome; G_DNA_Posterior fornix
164
89
-
Ala
TGC
[ENA]
¢þ
>WENV180857601
ODLB01010775
[ODLB] human metagenome; G_DNA_L_Retroauricular crease
393
318
-
Ala
TGC
[ENA]
¢þ
>WENV181044599
ODXV01017665
[ODXV] human metagenome; G_DNA_Tongue dorsum
17
91
+
Ala
TGC
[ENA]
¢þ
>WENV182438914
OIJP01003012
[OIJP] human gut metagenome; human gut
424
349
-
Ala
TGC
[ENA]
¢þ
>WENV182439948
OIJW01004547
[OIJW] human gut metagenome; human gut
164
239
+
Ala
TGC
[ENA]
¢þ
>WENV182443491
OIKN01000665
[OIKN] human gut metagenome; human gut
189
114
-
Ala
TGC
[ENA]
¢þ
>WENV182636505
OJKZ01011291
[OJKZ] metagenome; surface
888
813
-
Ala
TGC
[ENA]
¢þ
>WENV182640386
OJLB01006527
[OJLB] metagenome; surface
1407
1332
-
Ala
TGC
[ENA]
¢þ
>WENV182643386
OJLU01005666
[OJLU] metagenome; surface
888
813
-
Ala
TGC
[ENA]
¢þ
>WENV182672146
OJNM01457592
[OJNM] metagenome; surface
376
301
-
Ala
TGC
[ENA]
¢þ
>WENV182829150
OKDM01000466
[OKDM] human gut metagenome; human gut
464
389
-
Ala
TGC
[ENA]
¢þ
>WENV182849700
OKKT01000801
[OKKT] human gut metagenome; human gut
156
231
+
Ala
TGC
[ENA]
¢þ
>WENV170718265
LSQX01068736
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7640
7565
-
Ala
TGC
[ENA]
¢þ
>C181159875
CP027782
Bacillota
Clostridium tetani Mfbjulcb2 [CP027782]
2671223
2671148
-
Ala
TGC
-
¡û
>C191184235
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
14642
14717
+
Ala
TGC
-
¡û
>C191184245
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
237685
237760
+
Ala
TGC
-
¡û
>C191184265
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
3474232
3474157
-
Ala
TGC
-
¡û
>C191184306
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2791940
2791865
-
Ala
TGC
-
¡û
>W141806545
JPMD01000096
Bacillota
Clostridium sulfidigenes [JPMD]
265
340
+
Ala
TGC
[ENA]
¡û
>W1910213068
FMJL01000092
Bacillota
Clostridium sp. N3C [FMJL]
156
81
-
Ala
TGC
[ENA]
¡û
>W1911493747
OBJM01000004
Bacillota
Clostridium cadaveris LH052 [OBJM]
166197
166122
-
Ala
TGC
[ENA]
¡û
>W1911493792
OBJM01000014
Bacillota
Clostridium cadaveris LH052 [OBJM]
96301
96376
+
Ala
TGC
[ENA]
¡û
>W1911493819
OBJM01000035
Bacillota
Clostridium cadaveris LH052 [OBJM]
11768
11693
-
Ala
TGC
[ENA]
¡û
>W1911534545
OLMF01000004
Bacillota
Anaerococcus marasmi Marseille-P3557 [OLMF]
1385038
1384963
-
Ala
TGC
[ENA]
¡û
>W1911534547
OLMF01000004
Bacillota
Anaerococcus marasmi Marseille-P3557 [OLMF]
1216974
1216899
-
Ala
TGC
[ENA]
¡û
>W1911534569
OLMF01000004
Bacillota
Anaerococcus marasmi Marseille-P3557 [OLMF]
911672
911597
-
Ala
TGC
[ENA]
¡û
>W1911694073
QMAN01000019
Bacillota
Clostridium tetani 1337 [QMAN]
28011
27936
-
Ala
TGC
[ENA]
¡û
>W1911694197
QMAP01000018
Bacillota
Clostridium tetani 2017.061 [QMAP]
28860
28785
-
Ala
TGC
[ENA]
¡û
>W1911694734
QMAY01000017
Bacillota
Clostridium tetani 641.84 [QMAY]
28077
28002
-
Ala
TGC
[ENA]
¡û
>W1911694830
QMBA01000010
Bacillota
Clostridium tetani 3582 [QMBA]
28081
28006
-
Ala
TGC
[ENA]
¡û
>W1911694880
QMBB01000006
Bacillota
Clostridium tetani TMB2 [QMBB]
37136
37061
-
Ala
TGC
[ENA]
¡û
>W1911694971
QMBC01000018
Bacillota
Clostridium tetani COR1 [QMBC]
27739
27664
-
Ala
TGC
[ENA]
¡û
>W1911695048
QMBD01000021
Bacillota
Clostridium tetani B4 [QMBD]
28082
28007
-
Ala
TGC
[ENA]
¡û
>W1911695251
QMBH01000008
Bacillota
Clostridium tetani 1586-Z1 [QMBH]
28056
27981
-
Ala
TGC
[ENA]
¡û
>W1911696393
QMDR01000023
Bacillota
Clostridium tetani 3483 [QMDR]
28812
28737
-
Ala
TGC
[ENA]
¡û
>W1911696438
QMDR01000062
Bacillota
Clostridium tetani 3483 [QMDR]
325
250
-
Ala
TGC
[ENA]
¡û
>W1810579466
QEQN01000047
Bacillota
Clostridium thermopalmarium DSM 5974 [QEQN]
246
321
+
Ala
TGC
[ENA]
¡û
>W1810579468
QEQN01000048
Bacillota
Clostridium thermopalmarium DSM 5974 [QEQN]
5132
5057
-
Ala
TGC
[ENA]
¡û
>C151100884
HG530135
Bacillota
Clostridium tetani 12124569 [HG530135]
2802275
2802200
-
Ala
TGC
[Ensembl]
¡û
>C151100903
HG530135
Bacillota
Clostridium tetani 12124569 [HG530135]
39201
39126
-
Ala
TGC
[Ensembl]
¡û
>W1511345200
JRGG01000013
Bacillota
Clostridium tetani C2 [JRGG]
104
179
+
Ala
TGC
[ENA]
¡û
>W1511351021
JRMW01000023
Bacillota
Anaerococcus lactolyticus S7.1.13 [JRMW]
164
89
-
Ala
TGC
[ENA]
¡û
>W1511480260
JWIX01000077
Bacillota
Clostridium tetani A [JWIX]
27948
27873
-
Ala
TGC
[ENA]
¡û
>C131012892
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
14512
14587
+
Ala
TGC
[Ensembl]
¡û
>C131012955
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
6223282
6223207
-
Ala
TGC
[Ensembl]
¡û
>W1710518414
FNDZ01000006
Bacillota
Proteiniclasticum ruminis [FNDZ]
7070
7145
+
Ala
TGC
[ENA]
¡û
>W1710561477
FOOE01000032
Bacillota
Clostridium cadaveris [FOOE]
33193
33118
-
Ala
TGC
[ENA]
¡û
>W1710561488
FOOE01000044
Bacillota
Clostridium cadaveris [FOOE]
174
249
+
Ala
TGC
[ENA]
¡û
>W1710570838
FOVK01000007
Bacillota
Proteiniclasticum ruminis [FOVK]
123959
123884
-
Ala
TGC
[ENA]
¡û
>W1710587165
FQXU01000012
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
148627
148552
-
Ala
TGC
[ENA]
¡û
>W1710588724
FQZO01000014
Bacillota
Clostridium amylolyticum [FQZO]
400
475
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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