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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.311528 (99 seq.)
>W1710885806
LMXL01000096
Gammaproteobacteria
Escherichia coli O157:H7 [LMXL]
126008
126083
+
Asp
GTC
[ENA]
¡û
>W1710923345
LOBN01000007
Gammaproteobacteria
Enterobacter cloacae [LOBN]
949850
949775
-
Asp
GTC
[ENA]
¡û
>W1710923346
LOBN01000007
Gammaproteobacteria
Enterobacter cloacae [LOBN]
940419
940344
-
Asp
GTC
[ENA]
¡û
>W1711903120
MZMS01000008
Gammaproteobacteria
Klebsiella pneumoniae [MZMS]
1642253
1642178
-
Asp
GTC
[ENA]
¡û
>C008896
BA000007
Gammaproteobacteria
Escherichia coli O157:H7 str. Sakai [BA000007]
4740317
4740392
+
Asp
GTC
[Ensembl]
¡û
>C181005105
AP018340
Gammaproteobacteria
Enterobacter cloacae subsp. cloacae 2016_smu953 [AP018340]
184292
184367
+
Asp
GTC
-
¡û
>C181005140
AP018340
Gammaproteobacteria
Enterobacter cloacae subsp. cloacae 2016_smu953 [AP018340]
3987671
3987596
-
Asp
GTC
-
¡û
>C181005141
AP018340
Gammaproteobacteria
Enterobacter cloacae subsp. cloacae 2016_smu953 [AP018340]
3978322
3978247
-
Asp
GTC
-
¡û
>C181041687
CP019899
Gammaproteobacteria
Raoultella planticola GODA [CP019899]
4559363
4559288
-
Asp
GTC
-
¡û
>C181058363
CP022114
Gammaproteobacteria
Kluyvera genomosp. 3 YDC799 [CP022114]
4826429
4826354
-
Asp
GTC
-
¡û
>C181058380
CP022114
Gammaproteobacteria
Kluyvera genomosp. 3 YDC799 [CP022114]
3968176
3968101
-
Asp
GTC
-
¡û
>C181058381
CP022114
Gammaproteobacteria
Kluyvera genomosp. 3 YDC799 [CP022114]
3959553
3959478
-
Asp
GTC
-
¡û
>C181075931
CP023134
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae KpvK54 [CP023134]
324953
325028
+
Asp
GTC
-
¡û
>C181140139
CP026777
Gammaproteobacteria
Shigella dysenteriae 69-3818 [CP026777]
2423692
2423767
+
Asp
GTC
-
¡û
>C181140140
CP026777
Gammaproteobacteria
Shigella dysenteriae 69-3818 [CP026777]
2431897
2431972
+
Asp
GTC
-
¡û
>C181141804
CP026815
Gammaproteobacteria
Shigella dysenteriae 93-119 [CP026815]
3676389
3676314
-
Asp
GTC
-
¡û
>C181142068
CP026824
Gammaproteobacteria
Shigella dysenteriae CFSAN010954 [CP026824]
1311453
1311378
-
Asp
GTC
-
¡û
>C181142069
CP026824
Gammaproteobacteria
Shigella dysenteriae CFSAN010954 [CP026824]
1303234
1303159
-
Asp
GTC
-
¡û
>C181142491
CP026832
Gammaproteobacteria
Shigella dysenteriae ATCC 49346 [CP026832]
4618922
4618997
+
Asp
GTC
-
¡û
>C181145406
CP027104
Gammaproteobacteria
Escherichia coli RM14715 [CP027104]
981464
981539
+
Asp
GTC
-
¡û
>C181157375
CP027597
Gammaproteobacteria
Escherichia coli 86-3153 [CP027597]
1972760
1972685
-
Asp
GTC
-
¡û
>C181158878
CP027697
Gammaproteobacteria
Klebsiella pneumoniae KP30835 [CP027697]
926833
926908
+
Asp
GTC
-
¡û
>C191020818
CP022609
Gammaproteobacteria
Escherichia coli ATCC 700415 [CP022609]
1585446
1585521
+
Asp
GTC
-
¡û
>C191020844
CP022609
Gammaproteobacteria
Escherichia coli ATCC 700415 [CP022609]
5174396
5174321
-
Asp
GTC
-
¡û
>C191160435
CP038471
Gammaproteobacteria
Enterobacter roggenkampii BP10374 [CP038471]
2717957
2718032
+
Asp
GTC
-
¡û
>C191186136
CP041054
Gammaproteobacteria
Enterobacter hormaechei C126 [CP041054]
3162698
3162773
+
Asp
GTC
-
¡û
>C191186174
CP041054
Gammaproteobacteria
Enterobacter hormaechei C126 [CP041054]
2034514
2034439
-
Asp
GTC
-
¡û
>C191186175
CP041054
Gammaproteobacteria
Enterobacter hormaechei C126 [CP041054]
2025147
2025072
-
Asp
GTC
-
¡û
>W141700737
JMJE01000024
Gammaproteobacteria
Escherichia coli [JMJE]
5550
5625
+
Asp
GTC
[ENA]
¡û
>W1930024601
NLOP01000054
Gammaproteobacteria
Escherichia coli MOD1-EC5472 [NLOP]
102
177
+
Asp
GTC
[ENA]
¡û
>W1930024859
NLPM01000072
Gammaproteobacteria
Escherichia coli MOD1-EC5440 [NLPM]
76
1
-
Asp
GTC
[ENA]
¡û
>W1911020754
NLOP01000018
Gammaproteobacteria
Escherichia coli MOD1-EC5472 [NLOP]
93009
92934
-
Asp
GTC
[ENA]
¡û
>W1911022056
NLPM01000072
Gammaproteobacteria
Escherichia coli MOD1-EC5440 [NLPM]
8163
8088
-
Asp
GTC
[ENA]
¡û
>W1911022086
NLPN01000051
Gammaproteobacteria
Escherichia coli MOD1-EC5439 [NLPN]
31820
31745
-
Asp
GTC
[ENA]
¡û
>W1911022167
NLPP01000021
Gammaproteobacteria
Escherichia coli MOD1-EC5436 [NLPP]
390
465
+
Asp
GTC
[ENA]
¡û
>W1911022175
NLPP01000056
Gammaproteobacteria
Escherichia coli MOD1-EC5436 [NLPP]
31195
31120
-
Asp
GTC
[ENA]
¡û
>W1911022234
NLPR01000055
Gammaproteobacteria
Escherichia coli MOD1-EC5431 [NLPR]
7293
7368
+
Asp
GTC
[ENA]
¡û
>W1911209866
NRLL01000015
Gammaproteobacteria
Cronobacter sakazakii 494G [NRLL]
89467
89392
-
Asp
GTC
[ENA]
¡û
>W1911209876
NRLL01000026
Gammaproteobacteria
Cronobacter sakazakii 494G [NRLL]
48096
48021
-
Asp
GTC
[ENA]
¡û
>W1911209995
NRLN01000017
Gammaproteobacteria
Cronobacter sakazakii 492G [NRLN]
89830
89755
-
Asp
GTC
[ENA]
¡û
>W1911210029
NRLN01000132
Gammaproteobacteria
Cronobacter sakazakii 492G [NRLN]
23
98
+
Asp
GTC
[ENA]
¡û
>W1911210408
NRLT01000016
Gammaproteobacteria
Cronobacter sakazakii 467G [NRLT]
88989
88914
-
Asp
GTC
[ENA]
¡û
>W1911210429
NRLT01000039
Gammaproteobacteria
Cronobacter sakazakii 467G [NRLT]
34373
34298
-
Asp
GTC
[ENA]
¡û
>W1911210467
NRLU01000014
Gammaproteobacteria
Cronobacter sakazakii 466G [NRLU]
89166
89091
-
Asp
GTC
[ENA]
¡û
>W1911210478
NRLU01000017
Gammaproteobacteria
Cronobacter sakazakii 466G [NRLU]
326
401
+
Asp
GTC
[ENA]
¡û
>W1911283051
NTIU01000032
Gammaproteobacteria
Escherichia coli RCE05_s24 [NTIU]
8144
8219
+
Asp
GTC
[ENA]
¡û
>W1911430623
NXKW01000676
Gammaproteobacteria
Klebsiella pneumoniae ST-234:K054 [NXKW]
424
349
-
Asp
GTC
[ENA]
¡û
>W1911430641
NXKW01001006
Gammaproteobacteria
Klebsiella pneumoniae ST-234:K054 [NXKW]
206
131
-
Asp
GTC
[ENA]
¡û
>W1911431065
NXLB01000621
Gammaproteobacteria
Klebsiella pneumoniae ST-101:K126 [NXLB]
206
131
-
Asp
GTC
[ENA]
¡û
>SRA1004868
SRR006906.166289
metagenomic water samples (SRP000427)
197
122
-
Asp
GTC
[SRA]
>W2010152466
CAADJE010000023
Gammaproteobacteria
Raoultella planticola NCTC12998 [CAADJE]
402018
402093
+
Asp
GTC
[ENA]
¡û
>W2010152476
CAADJE010000024
Gammaproteobacteria
Raoultella planticola NCTC12998 [CAADJE]
486501
486576
+
Asp
GTC
[ENA]
¡û
>W2011054933
NRLL01000015
Gammaproteobacteria
Cronobacter sakazakii 494G [NRLL]
89467
89392
-
Asp
GTC
[ENA]
¡û
>W2011054943
NRLL01000026
Gammaproteobacteria
Cronobacter sakazakii 494G [NRLL]
48096
48021
-
Asp
GTC
[ENA]
¡û
>W2011055062
NRLN01000017
Gammaproteobacteria
Cronobacter sakazakii 492G [NRLN]
89830
89755
-
Asp
GTC
[ENA]
¡û
>W2011055096
NRLN01000132
Gammaproteobacteria
Cronobacter sakazakii 492G [NRLN]
23
98
+
Asp
GTC
[ENA]
¡û
>W2011055475
NRLT01000016
Gammaproteobacteria
Cronobacter sakazakii 467G [NRLT]
88989
88914
-
Asp
GTC
[ENA]
¡û
>W2011055496
NRLT01000039
Gammaproteobacteria
Cronobacter sakazakii 467G [NRLT]
34373
34298
-
Asp
GTC
[ENA]
¡û
>W2011055534
NRLU01000014
Gammaproteobacteria
Cronobacter sakazakii 466G [NRLU]
89166
89091
-
Asp
GTC
[ENA]
¡û
>W2011055545
NRLU01000017
Gammaproteobacteria
Cronobacter sakazakii 466G [NRLU]
326
401
+
Asp
GTC
[ENA]
¡û
>W2011257065
QIBK01000002
Gammaproteobacteria
Raoultella planticola 7084_1 [QIBK]
691841
691916
+
Asp
GTC
[ENA]
¡û
>W2011257077
QIBK01000002
Gammaproteobacteria
Raoultella planticola 7084_1 [QIBK]
1542368
1542443
+
Asp
GTC
[ENA]
¡û
>W2011826051
UGJB01000004
Gammaproteobacteria
Enterobacter cloacae NCTC10005 [UGJB]
4631348
4631273
-
Asp
GTC
[ENA]
¡û
>W2110326512
JADION010000042
Gammaproteobacteria
Gallibacterium anatis 1637 [JADION]
25810
25735
-
Asp
GTC
[ENA]
¡û
>C201119878
CP042981
Gammaproteobacteria
Escherichia coli NCCP 14539 [CP042981]
2839915
2839990
+
Asp
GTC
-
¡û
>C201136426
CP043669
Gammaproteobacteria
Klebsiella pneumoniae RJ18-06 [CP043669]
3112692
3112617
-
Asp
GTC
-
¡û
>C201136445
CP043669
Gammaproteobacteria
Klebsiella pneumoniae RJ18-06 [CP043669]
2243399
2243324
-
Asp
GTC
-
¡û
>C201136503
CP043670
Gammaproteobacteria
Klebsiella pneumoniae RJ18-01 [CP043670]
3228126
3228051
-
Asp
GTC
-
¡û
>C201136504
CP043670
Gammaproteobacteria
Klebsiella pneumoniae RJ18-01 [CP043670]
3218688
3218613
-
Asp
GTC
-
¡û
>C201251554
CP051706
Gammaproteobacteria
Escherichia coli SCU-124 [CP051706]
3688073
3687998
-
Asp
GTC
-
¡û
>C211193804
CP064820
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae K219 [CP064820]
2384503
2384428
-
Asp
GTC
-
¡û
>C211193816
CP064820
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae K219 [CP064820]
1512814
1512739
-
Asp
GTC
-
¡û
>C211193817
CP064820
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae K219 [CP064820]
1503422
1503347
-
Asp
GTC
-
¡û
>C211363637
CP078106
Gammaproteobacteria
Cronobacter sakazakii MOD1-GK1025B [CP078106]
4233217
4233292
+
Asp
GTC
-
¡û
>C211395192
CP082330
Gammaproteobacteria
Escherichia coli EC1390 [CP082330]
4481737
4481662
-
Asp
GTC
-
¡û
>C211395193
CP082330
Gammaproteobacteria
Escherichia coli EC1390 [CP082330]
4473771
4473696
-
Asp
GTC
-
¡û
>C211395216
CP082330
Gammaproteobacteria
Escherichia coli EC1390 [CP082330]
621631
621556
-
Asp
GTC
-
¡û
>C231239650
CP087290
Gammaproteobacteria
Escherichia coli APEC 102026 [CP087290]
3401867
3401942
+
Asp
GTC
-
¡û
>C231258975
CP089234
Gammaproteobacteria
Klebsiella sp. KPN54798 [CP089234]
4341212
4341137
-
Asp
GTC
-
¡û
>C231366959
CP096171
Gammaproteobacteria
Salmonella sp. WGH-01 [CP096171]
3822593
3822668
+
Asp
GTC
-
¡û
>C231366977
CP096171
Gammaproteobacteria
Salmonella sp. WGH-01 [CP096171]
2386214
2386139
-
Asp
GTC
-
¡û
>C231632207
CP120715
Gammaproteobacteria
Salmonella enterica 74_IZSPB_MA [CP120715]
940565
940640
+
Asp
GTC
-
¡û
>C231640775
CP121423
Gammaproteobacteria
Salmonella enterica 203_IZSPB_MA [CP121423]
1564472
1564397
-
Asp
GTC
-
¡û
>C231640806
CP121426
Gammaproteobacteria
Salmonella enterica 152_IZSPB_MA [CP121426]
730962
731037
+
Asp
GTC
-
¡û
>C231640882
CP121427
Gammaproteobacteria
Salmonella enterica 147_IZSPB_MA [CP121427]
526188
526263
+
Asp
GTC
-
¡û
>C231640903
CP121427
Gammaproteobacteria
Salmonella enterica 147_IZSPB_MA [CP121427]
1565670
1565745
+
Asp
GTC
-
¡û
>C241005645
AP022373
Gammaproteobacteria
Providencia rettgeri BML2531 [AP022373]
894683
894758
+
Asp
GTC
-
¡û
>C241058928
CP041649
Gammaproteobacteria
Klebsiella pneumoniae NKU_KlebA1 [CP041649]
1067129
1067054
-
Asp
GTC
-
¡û
>W11138303
AEIA01000030
Gammaproteobacteria
Escherichia fergusonii B253 [AEIA]
78
3
-
Asp
GTC
[ENA]
¡û
>C161027925
CP010512
Gammaproteobacteria
Enterobacter cloacae colR/S [CP010512]
5901
5826
-
Asp
GTC
-
¡û
>W1610578075
LAWZ01000131
Gammaproteobacteria
Escherichia coli [LAWZ]
10907
10832
-
Asp
GTC
[ENA]
¡û
>W1610578076
LAWZ01000131
Gammaproteobacteria
Escherichia coli [LAWZ]
2901
2826
-
Asp
GTC
[ENA]
¡û
>W1610578187
LAXB01000015
Gammaproteobacteria
Escherichia coli [LAXB]
92320
92245
-
Asp
GTC
[ENA]
¡û
>W1610747732
LMXL01000096
Gammaproteobacteria
Escherichia coli O157:H7 [LMXL]
126008
126083
+
Asp
GTC
[ENA]
¡û
>W1610780824
LOBN01000007
Gammaproteobacteria
Enterobacter cloacae [LOBN]
949850
949775
-
Asp
GTC
[ENA]
¡û
>W1610780825
LOBN01000007
Gammaproteobacteria
Enterobacter cloacae [LOBN]
940419
940344
-
Asp
GTC
[ENA]
¡û
>W1710696948
LAWZ01000131
Gammaproteobacteria
Escherichia coli [LAWZ]
10907
10832
-
Asp
GTC
[ENA]
¡û
>W1710696949
LAWZ01000131
Gammaproteobacteria
Escherichia coli [LAWZ]
2901
2826
-
Asp
GTC
[ENA]
¡û
>W1710697060
LAXB01000015
Gammaproteobacteria
Escherichia coli [LAXB]
92320
92245
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK