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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.312259 (82 seq.)
>W131234895
AULD01000007
Actinomycetota
Agrococcus lahaulensis DSM 17612 [AULD]
175588
175513
-
Arg
CCG
[ENA]
¡û
>WENV180018354
FSYX01000268
[FSYX] metagenome; soil
2290
2364
+
Arg
CCG
[ENA]
¡û
>WENV180394768
OBPS01064542
[OBPS] marine metagenome; ENVO:00002010 seawater
206
133
-
Arg
CCG
[ENA]
¡û
>WENV181166709
OEIU01001251
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
17181
17254
+
Arg
CCG
[ENA]
¡û
>WENV181325648
OFLJ01010809
[OFLJ] seawater metagenome; seawater
166
93
-
Arg
CCG
[ENA]
¡û
>WENV182540425
OJAJ01000575
[OJAJ] seawater metagenome; Sea water
350
423
+
Arg
CCG
[ENA]
¡û
>WENV182540838
OJAQ01000034
[OJAQ] seawater metagenome; Sea water
17200
17273
+
Arg
CCG
[ENA]
¡û
>WENV182543022
OJAZ01016767
[OJAZ] seawater metagenome; Sea water
509
582
+
Arg
CCG
[ENA]
¡û
>WENV182544279
OJBF01001526
[OJBF] seawater metagenome; Sea water
1105
1032
-
Arg
CCG
[ENA]
¡û
>WENV182545020
OJBL01003284
[OJBL] seawater metagenome; Sea water
578
651
+
Arg
CCG
[ENA]
¡û
>WENV182545609
OJBN01008954
[OJBN] seawater metagenome; Sea water
469
396
-
Arg
CCG
[ENA]
¡û
>WENV182548554
OJBW01002269
[OJBW] seawater metagenome; Sea water
1043
970
-
Arg
CCG
[ENA]
¡û
>WENV182550206
OJBZ01011303
[OJBZ] seawater metagenome; Sea water
520
447
-
Arg
CCG
[ENA]
¡û
>WENV182552688
OJCN01007496
[OJCN] seawater metagenome; Sea water
249
176
-
Arg
CCG
[ENA]
¡û
>WENV182553177
OJCR01000270
[OJCR] seawater metagenome; Sea water
23619
23546
-
Arg
CCG
[ENA]
¡û
>WENV182554074
OJCT01000535
[OJCT] seawater metagenome; Sea water
1211
1284
+
Arg
CCG
[ENA]
¡û
>WENV182557164
OJDI01001666
[OJDI] seawater metagenome; Sea water
2175
2248
+
Arg
CCG
[ENA]
¡û
>WENV182558570
OJDM01019079
[OJDM] seawater metagenome; Sea water
166
239
+
Arg
CCG
[ENA]
¡û
>WENV182561593
OJDX01000021
[OJDX] seawater metagenome; Sea water
7115
7188
+
Arg
CCG
[ENA]
¡û
>WENV182561924
OJDY01000014
[OJDY] seawater metagenome; Sea water
29321
29248
-
Arg
CCG
[ENA]
¡û
>WENV182562669
OJEA01000031
[OJEA] seawater metagenome; Sea water
30001
29928
-
Arg
CCG
[ENA]
¡û
>WENV182563020
OJEB01000001
[OJEB] seawater metagenome; Sea water
29951
29878
-
Arg
CCG
[ENA]
¡û
>WENV182564051
OJEE01000017
[OJEE] seawater metagenome; Sea water
26873
26800
-
Arg
CCG
[ENA]
¡û
>WENV182568984
OJEY01000003
[OJEY] seawater metagenome; Sea water
34979
34906
-
Arg
CCG
[ENA]
¡û
>WENV182569688
OJFB01000019
[OJFB] seawater metagenome; Sea water
21815
21742
-
Arg
CCG
[ENA]
¡û
>WENV182573742
OJFP01021313
[OJFP] seawater metagenome; Sea water
684
757
+
Arg
CCG
[ENA]
¡û
>WENV182574546
OJFS01000016
[OJFS] seawater metagenome; Sea water
86095
86168
+
Arg
CCG
[ENA]
¡û
>WENV182575781
OJFW01001324
[OJFW] seawater metagenome; Sea water
653
726
+
Arg
CCG
[ENA]
¡û
>WENV182576613
OJFY01000546
[OJFY] seawater metagenome; Sea water
777
850
+
Arg
CCG
[ENA]
¡û
>WENV182577940
OJGM01000063
[OJGM] seawater metagenome; Sea water
701
774
+
Arg
CCG
[ENA]
¡û
>WENV182582071
OJHA01000001
[OJHA] seawater metagenome; Sea water
116126
116199
+
Arg
CCG
[ENA]
¡û
>WENV182582379
OJHB01000009
[OJHB] seawater metagenome; Sea water
38825
38898
+
Arg
CCG
[ENA]
¡û
>WENV182583336
OJHD01004402
[OJHD] seawater metagenome; Sea water
977
1050
+
Arg
CCG
[ENA]
¡û
>WENV182584824
OJHG01014361
[OJHG] seawater metagenome; Sea water
536
463
-
Arg
CCG
[ENA]
¡û
>WENV182586821
OJHK01006240
[OJHK] seawater metagenome; Sea water
1254
1327
+
Arg
CCG
[ENA]
¡û
>WENV182587539
OJHN01000012
[OJHN] seawater metagenome; Sea water
24841
24768
-
Arg
CCG
[ENA]
¡û
>WENV182588414
OJHT01001061
[OJHT] seawater metagenome; Sea water
137
210
+
Arg
CCG
[ENA]
¡û
>WENV182592343
OJIR01000050
[OJIR] seawater metagenome; Sea water
20821
20748
-
Arg
CCG
[ENA]
¡û
>WENV183054493
OLGU01000002
[OLGU] seawater metagenome; Sea water
181781
181854
+
Arg
CCG
[ENA]
¡û
>WENV183055056
OLGW01002560
[OLGW] seawater metagenome; Sea water
1084
1011
-
Arg
CCG
[ENA]
¡û
>WENV183058992
OLHS01000662
[OLHS] seawater metagenome; Sea water
1197
1124
-
Arg
CCG
[ENA]
¡û
>WENV183059205
OLHU01000006
[OLHU] seawater metagenome; Sea water
21252
21179
-
Arg
CCG
[ENA]
¡û
>WENV183060164
OLHX01000005
[OLHX] seawater metagenome; Sea water
32502
32575
+
Arg
CCG
[ENA]
¡û
>WENV183061107
OLHY01049510
[OLHY] seawater metagenome; Sea water
156
83
-
Arg
CCG
[ENA]
¡û
>WENV183619505
OOFQ01010888
[OOFQ] marine metagenome; seawater
166
93
-
Arg
CCG
[ENA]
¡û
>WENV170568223
FLMP01023028
[FLMP] seawater metagenome; seawater
1240
1313
+
Arg
CCG
[ENA]
¡û
>WENV170572651
FLOH01001118
[FLOH] marine metagenome; water
22291
22218
-
Arg
CCG
[ENA]
¡û
>WENV170598684
FUWD010044878
[FUWD] metagenome; unknown
244
169
-
Arg
CCG
[ENA]
¡û
>WENV170626824
FUWD013229743
[FUWD] metagenome; unknown
25790
25717
-
Arg
CCG
[ENA]
¡û
>WENV170626980
FUWD013230617
[FUWD] metagenome; unknown
2611
2538
-
Arg
CCG
[ENA]
¡û
>WENV170627100
FUWD013231418
[FUWD] metagenome; unknown
7619
7692
+
Arg
CCG
[ENA]
¡û
>WENV170628620
FUWD013249816
[FUWD] metagenome; unknown
13214
13287
+
Arg
CCG
[ENA]
¡û
>WENV170951291
MEHZ011546141
[MEHZ] marine metagenome; marine surface water
22029
21956
-
Arg
CCG
[ENA]
¡û
>W141750766
JNSD01000001
Actinomycetota
actinobacterium acMicro-4 [JNSD]
37910
37837
-
Arg
CCG
[ENA]
¡û
>W1810169223
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
783123
783197
+
Arg
CCG
[ENA]
¡û
>W2010472199
JAAHFD010000002
Actinomycetota
Diaminobutyricimonas sp. TR449 [JAAHFD]
154995
154922
-
Arg
CCG
[ENA]
¡û
>W2010473304
JAAIJT010000001
Actinomycetota
Salinibacterium sp. ZJ450 [JAAIJT]
162155
162080
-
Arg
CCG
[ENA]
¡û
>W2010473388
JAAIJU010000019
Actinomycetota
Salinibacterium sp. ZJ454 [JAAIJU]
31214
31139
-
Arg
CCG
[ENA]
¡û
>SRA1035766
SRR035089.372376
454 Sequencing (SRP001810)
229
302
+
Arg
CCG
[SRA]
>W2010526977
JAANZA010000001
Actinomycetota
Cryobacterium sp. BB307 [JAANZA]
1341437
1341364
-
Arg
CCG
[ENA]
¡û
>SRA1036503
SRR035089.534706
454 Sequencing (SRP001810)
149
76
-
Arg
CCG
[SRA]
>W2010672220
JACCCH010000001
Actinomycetota
Leifsonia sp. AK011 [JACCCH]
1515715
1515642
-
Arg
CCG
[ENA]
¡û
>W2010694689
JACHBP010000001
Actinomycetota
Cryobacterium mesophilum DSM 19267 [JACHBP]
683512
683586
+
Arg
CCG
[ENA]
¡û
>SRA1046568
SRR035093.334951
454 Sequencing (SRP001814)
240
167
-
Arg
CCG
[SRA]
>W2011659884
SOFI01000003
Actinomycetota
Cryobacterium mesophilum CGMCC 1.10440 [SOFI]
731161
731235
+
Arg
CCG
[ENA]
¡û
>SRA1051880
SRR035098.92435
454 Sequencing (SRP001819)
209
282
+
Arg
CCG
[SRA]
>SRA1052644
SRR035098.243820
454 Sequencing (SRP001819)
322
247
-
Arg
CCG
[SRA]
>SRA1053297
SRR035098.377045
454 Sequencing (SRP001819)
361
288
-
Arg
CCG
[SRA]
>SRA1053314
SRR035098.381075
454 Sequencing (SRP001819)
324
249
-
Arg
CCG
[SRA]
>SRA1054461
SRR035099.137270
454 Sequencing (SRP001820)
289
364
+
Arg
CCG
[SRA]
>W2110195953
JABXWQ010000003
Actinomycetota
Cryobacterium sp. BB736 [JABXWQ]
133581
133654
+
Arg
CCG
[ENA]
¡û
>C211153137
CP061771
Actinomycetota
Salinibacterium sp. ZJ450 [CP061771]
757123
757048
-
Arg
CCG
-
¡û
>C211277174
CP070501
Actinomycetota
Agrococcus sp. Marseille-Q4369 [CP070501]
1006506
1006580
+
Arg
CCG
-
¡û
>C231180542
CP083405
Actinomycetota
Mycobacterium lepromatosis FJ924 [CP083405]
1500160
1500085
-
Arg
CCG
-
¡û
>C231201739
CP085036
Actinomycetota
Microbacteriaceae bacterium SG_E_30_P1 [CP085036]
494214
494289
+
Arg
CCG
-
¡û
>C231359283
CP095269
Actinomycetota
Agrococcus sp. SCSIO52902 [CP095269]
1741464
1741389
-
Arg
CCG
-
¡û
>C241111797
CP046619
Actinomycetota
Diaminobutyricimonas sp. LJ205 [CP046619]
722775
722702
-
Arg
CCG
-
¡û
>W1511353983
JRPY01000044
Actinomycetota
Mycobacterium lepromatosis Mx1-22A [JRPY]
64545
64470
-
Arg
CCG
[ENA]
¡û
>W1511584949
LAWX01000020
Actinomycetota
Mycobacterium lepromatosis FJ924 [LAWX]
1401
1326
-
Arg
CCG
[ENA]
¡û
>WENV045546
AACY022526682
Marine microbial communities from Global Ocean Sampling (GOS)
763
688
-
Arg
CCG
[ENA]
>W1610625681
LIAY01000100
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
1534
1607
+
Arg
CCG
[ENA]
¡û
>W1710756808
LIAY01000100
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
1534
1607
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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