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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.312550 (47 seq.)
>W1711055502
LRUX01000031
Campylobacterota
Aliarcobacter skirrowii [LRUX]
84830
84754
-
Met
CAT
[ENA]
¡û
>W1711055519
LRUY01000042
Campylobacterota
Aliarcobacter skirrowii [LRUY]
3
79
+
Met
CAT
[ENA]
¡û
>W1711055565
LRUZ01000035
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
3
79
+
Met
CAT
[ENA]
¡û
>WENV180284227
OBID01021629
[OBID] metagenome; sludge
415
491
+
fMet
CAT
[ENA]
¢þ
>WENV181373454
OFQX01065327
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
118
42
-
fMet
CAT
[ENA]
¢þ
>WENV183721030
PDWJ01052698
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1644
1720
+
fMet
CAT
[ENA]
¢þ
>WENV170554234
CXWK01055213
[CXWK] wastewater metagenome; activated sludge
1224
1148
-
Met
CAT
[ENA]
¢þ
>WENV170657387
JTFO01138921
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
174
250
+
Met
CAT
[ENA]
¢þ
>WENV170686003
LFRM01121424
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2546
2622
+
Met
CAT
[ENA]
¢þ
>WENV170721010
LSQX01175751
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2760
2684
-
Met
CAT
[ENA]
¢þ
>C191084555
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
1484069
1483993
-
Met
CAT
-
¡û
>C191084565
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
983870
983794
-
Met
CAT
-
¡û
>C191084610
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2109026
2108950
-
Met
CAT
-
¡û
>C191095041
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
1528850
1528926
+
Met
CAT
-
¡û
>C191095045
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
1529277
1529353
+
Met
CAT
-
¡û
>C191122832
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
1346301
1346225
-
Met
CAT
-
¡û
>C191122842
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
912719
912643
-
Met
CAT
-
¡û
>W1910810866
MUXE01000014
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
4848
4924
+
Met
CAT
[ENA]
¡û
>W1910810890
MUXE01000024
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
21158
21234
+
Met
CAT
[ENA]
¡û
>W1911200244
NREO01000021
Campylobacterota
Arcobacter suis CECT7833 [NREO]
1592
1516
-
Met
CAT
[ENA]
¡û
>W1911200297
NREP01000016
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
29509
29585
+
Met
CAT
[ENA]
¡û
>W1911424335
NXGC01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
524669
524593
-
Met
CAT
[ENA]
¡û
>W1911424413
NXGE01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 10210 [NXGE]
256028
256104
+
Met
CAT
[ENA]
¡û
>W1911424625
NXGJ01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 9861 [NXGJ]
410108
410032
-
Met
CAT
[ENA]
¡û
>W1911424629
NXGJ01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 9861 [NXGJ]
409691
409615
-
Met
CAT
[ENA]
¡û
>W1911424654
NXGK01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
57666
57742
+
Met
CAT
[ENA]
¡û
>W1911424658
NXGK01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
58093
58169
+
Met
CAT
[ENA]
¡û
>W1911426155
NXIC01000004
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
91419
91343
-
Met
CAT
[ENA]
¡û
>W1911426160
NXIC01000006
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
30661
30737
+
Met
CAT
[ENA]
¡û
>W1911426366
NXIH01000002
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
256143
256067
-
Met
CAT
[ENA]
¡û
>W1911576107
PDJT01000022
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
37169
37093
-
Met
CAT
[ENA]
¡û
>W1911576117
PDJT01000055
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
24850
24774
-
Met
CAT
[ENA]
¡û
>W1911576709
PDKH01000002
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
251158
251234
+
Met
CAT
[ENA]
¡û
>W1911576727
PDKH01000006
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
38917
38841
-
Met
CAT
[ENA]
¡û
>W1911748917
QWFD01000002
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
103921
103845
-
Met
CAT
[ENA]
¡û
>W1911748934
QWFD01000007
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
39140
39064
-
Met
CAT
[ENA]
¡û
>W1911748959
QWFE01000002
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
103921
103845
-
Met
CAT
[ENA]
¡û
>W1911748976
QWFE01000007
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
39140
39064
-
Met
CAT
[ENA]
¡û
>W1810584090
QEYG01000003
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
34574
34498
-
Met
CAT
[ENA]
¡û
>W1810584109
QEYG01000037
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
11935
11859
-
Met
CAT
[ENA]
¡û
>W1810584139
QEYH01000002
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
103921
103845
-
Met
CAT
[ENA]
¡û
>W1810584156
QEYH01000007
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
39140
39064
-
Met
CAT
[ENA]
¡û
>W1810584192
QEYI01000003
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
14024
13948
-
Met
CAT
[ENA]
¡û
>W1810584199
QEYI01000008
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
33299
33223
-
Met
CAT
[ENA]
¡û
>W1610896548
LRUX01000031
Campylobacterota
Aliarcobacter skirrowii [LRUX]
84830
84754
-
Met
CAT
[ENA]
¡û
>W1610896565
LRUY01000042
Campylobacterota
Aliarcobacter skirrowii [LRUY]
3
79
+
Met
CAT
[ENA]
¡û
>W1610896611
LRUZ01000035
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
3
79
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK