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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.313624 (36 seq.)
>WENV180111326
OAPN01062245
[OAPN] marine metagenome; 2011
91
16
-
Thr
CGT
[ENA]
¡û
>WENV181369613
OFQP01012187
[OFQP] freshwater metagenome; Freshwater Lake
807
732
-
Thr
CGT
[ENA]
¡û
>WENV181370004
OFQR01005487
[OFQR] freshwater metagenome; Freshwater Lake
870
945
+
Thr
CGT
[ENA]
¡û
>WENV181370256
OFQS01001252
[OFQS] freshwater metagenome; Freshwater Lake
1526
1451
-
Thr
CGT
[ENA]
¡û
>WENV181839414
OGVO01001437
[OGVO] freshwater metagenome; freshwater
3608
3683
+
Thr
CGT
[ENA]
¡û
>WENV182578957
OJGP01033155
[OJGP] seawater metagenome; Sea water
327
402
+
Thr
CGT
[ENA]
¡û
>WENV183697294
OUNJ010295477
[OUNJ] metagenome; soil
652
577
-
Thr
CGT
[ENA]
¡û
>WENV170136553
CENV01047957
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7294
7369
+
Thr
CGT
[ENA]
¡û
>WENV170155665
CEOG01087124
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
88
163
+
Thr
CGT
[ENA]
¡û
>WENV170201114
CEPP01077882
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
739
664
-
Thr
CGT
[ENA]
¡û
>WENV170603420
FUWD010308650
[FUWD] metagenome; unknown
287
212
-
Thr
CGT
[ENA]
¡û
>WENV170612873
FUWD012715285
[FUWD] metagenome; unknown
351
276
-
Thr
CGT
[ENA]
¡û
>WENV170705845
LNAP01000471
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
45018
44943
-
Thr
CGT
[ENA]
¡û
>WENV170706386
LNAP01002751
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
17193
17268
+
Thr
CGT
[ENA]
¡û
>WENV170706475
LNAP01003371
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
25802
25727
-
Thr
CGT
[ENA]
¡û
>WENV170706933
LNAP01009191
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2618
2693
+
Thr
CGT
[ENA]
¡û
>WENV170707032
LNAP01011242
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
6107
6182
+
Thr
CGT
[ENA]
¡û
>WENV170707445
LNAP01021080
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
39
114
+
Thr
CGT
[ENA]
¡û
>WENV170707841
LNAP01036318
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
24
99
+
Thr
CGT
[ENA]
¡û
>WENV170707878
LNAP01037605
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2067
1992
-
Thr
CGT
[ENA]
¡û
>WENV170708066
LNAP01047610
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1712
1637
-
Thr
CGT
[ENA]
¡û
>C191023156
CP022987
Betaproteobacteria
Pollutimonas thiosulfatoxidans YE3 [CP022987]
567902
567827
-
Thr
CGT
-
¡û
>W1911192789
NQYH01000006
Betaproteobacteria
Pusillimonas sp. L52-1-41 [NQYH]
161346
161421
+
Thr
CGT
[ENA]
¡û
>W1810062118
PDNW01000001
Betaproteobacteria
Pollutimonas subterranea JR1/69-3-13 [PDNW]
467160
467085
-
Thr
CGT
[ENA]
¡û
>W1810759277
QPJH01000002
Betaproteobacteria
Pusillimonas sp. EA3 [QPJH]
129737
129662
-
Thr
CGT
[ENA]
¡û
>W2010673710
JACCEO010000003
Betaproteobacteria
Alcaligenaceae bacterium CGII-43 [JACCEO]
82803
82878
+
Thr
CGT
[ENA]
¡û
>W2010674021
JACCEV010000002
Betaproteobacteria
Pusillimonas harenae DSM 25667 [JACCEV]
363436
363361
-
Thr
CGT
[ENA]
¡û
>W2011046286
NQYH01000006
Betaproteobacteria
Pusillimonas sp. L52-1-41 [NQYH]
161346
161421
+
Thr
CGT
[ENA]
¡û
>SRA1051490
SRR035098.14767
454 Sequencing (SRP001819)
281
206
-
Thr
CGT
[SRA]
>SRA1052285
SRR035098.175304
454 Sequencing (SRP001819)
287
212
-
Thr
CGT
[SRA]
>W2110304237
JADCNH010000049
Betaproteobacteria
Achromobacter sp. GG226 [JADCNH]
18162
18087
-
Thr
CGT
[ENA]
¡û
>C201101882
CP041730
Betaproteobacteria
Chitinimonas sp. R3-44 [CP041730]
4101160
4101235
+
Thr
CGT
-
¡û
>C231098290
CP063982
Betaproteobacteria
Orrella sp. f23 [CP063982]
1800330
1800405
+
Thr
CGT
-
¡û
>C241071540
CP043046
Betaproteobacteria
Pigmentiphaga aceris Mada1488 [CP043046]
3817152
3817077
-
Thr
CGT
-
¡û
>C241140249
CP049990
Betaproteobacteria
Pusillimonas sp. DMV24BSW_D [CP049990]
1733186
1733261
+
Thr
CGT
-
¡û
>W2130025197
JAEDAK010000010
Betaproteobacteria
Inhella proteolytica 1Y17 [JAEDAK]
77204
77129
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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