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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.313661 (41 seq.)
>WENV180346375
OBLN01077123
[OBLN] sediment metagenome; sediment
115
39
-
Met
CAT
[ENA]
¡û
>W141145904
AWVB01000024
Bacillota
Peptostreptococcaceae bacterium oral taxon 113 oral taxon 113 str. W5053 [AWVB]
306
382
+
Met
CAT
[ENA]
¡û
>WENV181810651
OGSV01000715
[OGSV] human gut metagenome; fecal sample 4 from infant 3
1857
1781
-
Met
CAT
[ENA]
¡û
>W141246644
CANF01002246
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
379
303
-
Met
CAT
[ENA]
¡û
>W141246724
CANG01000936
Bacillota
Sedimentibacter sp. B4 [CANG]
453
377
-
Met
CAT
[ENA]
¡û
>W141265088
CCEZ01000043
Bacillota
Anaerosalibacter massiliensis ND1 [CCEZ]
527454
527378
-
Met
CAT
[ENA]
¡û
>WENV170643965
JMBV01014830
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
196
272
+
Met
CAT
[ENA]
¡û
>WENV170644117
JMBV01041840
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
180
256
+
Met
CAT
[ENA]
¡û
>WENV170644377
JMBW01008980
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
895
971
+
Met
CAT
[ENA]
¡û
>WENV170644429
JMBW01015014
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
163
239
+
Met
CAT
[ENA]
¡û
>WENV170644512
JMBW01022141
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
384
460
+
Met
CAT
[ENA]
¡û
>WENV170645201
JMBX01017628
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
182
258
+
Met
CAT
[ENA]
¡û
>WENV170645241
JMBX01024467
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
180
256
+
Met
CAT
[ENA]
¡û
>WENV170645259
JMBX01026095
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
193
117
-
Met
CAT
[ENA]
¡û
>WENV170656982
JTFO01065984
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
970
1047
+
Met
CAT
[ENA]
¡û
>WENV170669937
LAHS01009733
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
354
278
-
Met
CAT
[ENA]
¡û
>WENV170784170
MCHG01000083
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
13979
13903
-
Met
CAT
[ENA]
¡û
>C191135210
CP035130
Bacillota
Gudongella oleilytica W6 [CP035130]
1447906
1447830
-
Met
CAT
-
¡û
>C191138222
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
1494272
1494348
+
Met
CAT
-
¡û
>W1910211471
FMDO01000059
Bacillota
Proteiniborus sp. DW1 [FMDO]
118
42
-
Met
CAT
[ENA]
¡û
>W1910373614
FUHM01000002
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
413
489
+
Met
CAT
[ENA]
¡û
>W1910496848
FXVB02000087
Bacillota
Firmicutes bacterium HV4-6-A5C [FXVB]
357
433
+
Met
CAT
[ENA]
¡û
>W2010271429
CABKTM020000043
Bacillota
Anaerosalibacter massiliensis [CABKTM]
527454
527378
-
Met
CAT
[ENA]
¡û
>W2010273466
CABKUS020000014
Bacillota
Clostridiales bacterium [CABKUS]
762936
762860
-
Met
CAT
[ENA]
¡û
>W2010377925
FMDO01000059
Bacillota
Proteiniborus sp. DW1 [FMDO]
118
42
-
Met
CAT
[ENA]
¡û
>W2010401487
FUHM01000002
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
413
489
+
Met
CAT
[ENA]
¡û
>W2010416551
FXVB02000087
Bacillota
Firmicutes bacterium HV4-6-A5C [FXVB]
357
433
+
Met
CAT
[ENA]
¡û
>W2011844376
UHHZ01000001
Bacillota
Tissierella praeacuta NCTC11158 [UHHZ]
1075158
1075234
+
Met
CAT
[ENA]
¡û
>W2012153495
VULR01000017
Bacillota
Anaerosalibacter bizertensis Med78-601-WT-4W-RMD-3 [VULR]
531
607
+
Met
CAT
[ENA]
¡û
>W2012156238
VUNQ01000099
Bacillota
Tissierella sp. DSM 105185 WCA3-693-APC-4? [VUNQ]
2206
2130
-
Met
CAT
[ENA]
¡û
>W2110539032
JAGGKS010000010
Bacillota
Sedimentibacter acidaminivorans DSM 24004 [JAGGKS]
713
789
+
Met
CAT
[ENA]
¡û
>W2110618867
JAHLNM010000021
Bacillota
Tissierella praeacuta N14 [JAHLNM]
25802
25726
-
Met
CAT
[ENA]
¡û
>W2110619519
JAHLOA010000004
Bacillota
Anaerosalibacter bizertensis N103 [JAHLOA]
282973
282897
-
Met
CAT
[ENA]
¡û
>W2110619875
JAHLOH010000044
Bacillota
Tissierella carlieri N39 [JAHLOH]
410
486
+
Met
CAT
[ENA]
¡û
>W2110621246
JAHLPJ010000001
Bacillota
Tissierella pigra MSJ-22 [JAHLPJ]
2621490
2621414
-
Met
CAT
[ENA]
¡û
>W2110691168
JAIOUP010000001
Bacillota
Schnuerera sp. xch1 [JAIOUP]
451396
451320
-
Met
CAT
[ENA]
¡û
>C211290950
CP071445
Bacillota
Sedimentibacter sp. zth1 [CP071445]
1378893
1378817
-
Met
CAT
-
¡û
>C211290990
CP071445
Bacillota
Sedimentibacter sp. zth1 [CP071445]
1175344
1175268
-
Met
CAT
-
¡û
>C211291003
CP071445
Bacillota
Sedimentibacter sp. zth1 [CP071445]
1160931
1160855
-
Met
CAT
-
¡û
>W1510725111
CXYU01000021
Bacillota
Clostridiales bacterium mt11 [CXYU]
40212
40136
-
Met
CAT
[ENA]
¡û
>W1511705904
LGSS01000035
Bacillota
Gottschalkia purinilytica DSM 1384 [LGSS]
7213
7289
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK