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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.314164 (68 seq.)
>W1710991288
LPXO01000007
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
100123
100199
+
Arg
CCG
[ENA]
¡û
>W1711572458
MNBW01000017
Alphaproteobacteria
Nioella nitratireducens [MNBW]
8725
8649
-
Arg
CCG
[ENA]
¡û
>W1712106713
NIWA01000002
Alphaproteobacteria
Mameliella alba lacteus [NIWA]
353900
353824
-
Arg
CCG
[ENA]
¡û
>C171032439
CP014595
Alphaproteobacteria
Salipiger sp. CCB-MM3 [CP014595, CP014596]
2518606
2518682
+
Arg
CCG
-
¡û
>C171035458
CP015093
Alphaproteobacteria
Salipiger abyssi JLT2014 [CP015093]
316021
315945
-
Arg
CCG
-
¡û
>W131050070
AMWC01001750
Alphaproteobacteria
Donghicola sp. S598 [AMWC]
380
456
+
Arg
CCG
[ENA]
¡û
>W131183041
ARRM01000057
Alphaproteobacteria
Salipiger mucosus DSM 16094 [ARRM]
19540
19464
-
Arg
CCG
[ENA]
¡û
>w018820
AATQ01000019
Alphaproteobacteria
Salipiger bermudensis HTCC2601 [AATQ]
11937
11864
-
Arg
CCG
[ENA]
¡û
>w014844
AAOT01000010
Alphaproteobacteria
Oceanicola granulosus HTCC2516 [AAOT]
55287
55214
-
Arg
CCG
[ENA]
¡û
>w012772
AAMT01000004
Alphaproteobacteria
Maritimibacter alkaliphilus HTCC2654 [AAMT]
147431
147509
+
Arg
CCG
[ENA]
¡û
>W141064388
APVH01000011
Alphaproteobacteria
Salipiger mucosus DSM 16094 [APVH]
101030
101106
+
Arg
CCG
[ENA]
¡û
>W141065861
AQRC01000005
Alphaproteobacteria
Thioclava atlantica 13D2W-2 [AQRC]
113881
113805
-
Arg
CCG
[ENA]
¡û
>W141199843
AYXI01000068
Alphaproteobacteria
Defluviimonas sp. 20V17 [AYXI]
25846
25770
-
Arg
CCG
[ENA]
¡û
>WENV183714709
PDWI01199131
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1255
1179
-
Arg
CCG
[ENA]
¡û
>WENV170013128
ATLU01000040
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
1540
1616
+
Arg
CCG
[ENA]
¡û
>WENV170176470
CEOS01081193
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
152
228
+
Arg
CCG
[ENA]
¡û
>WENV170551013
CXWF01067549
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
17856
17932
+
Arg
CCG
[ENA]
¡û
>WENV170635325
JDSF01002401
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
720
796
+
Arg
CCG
[ENA]
¡û
>WENV170635471
JDSF01030283
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
220
144
-
Arg
CCG
[ENA]
¡û
>WENV170635664
JDSH01000005
[JDSH] bioreactor metagenome; continuous culture bioreactor electron acceptor NO2- transfer2; day 38 after inoculation
58131
58207
+
Arg
CCG
[ENA]
¡û
>C181060560
CP022190
Alphaproteobacteria
Alloyangia pacifica YSBP01 [CP022189, CP022190]
1009154
1009078
-
Arg
CCG
-
¡û
>W1910442818
FWFN01000010
Alphaproteobacteria
Pseudooceanicola marinus CECT 7751 [FWFN]
10253
10177
-
Arg
CCG
[ENA]
¡û
>W1911492669
OBEA01000004
Alphaproteobacteria
Pseudooceanicola antarcticus CGMCC 1.12662 [OBEA]
213800
213876
+
Arg
CCG
[ENA]
¡û
>W1810101678
PGTC01000008
Alphaproteobacteria
Pseudooceanicola marinus LMG 23705 [PGTC]
142637
142713
+
Arg
CCG
[ENA]
¡û
>W1810101779
PGTD01000023
Alphaproteobacteria
Pseudooceanicola antarcticus Ar-45 [PGTD]
233141
233065
-
Arg
CCG
[ENA]
¡û
>W1810477608
QAOY01000002
Alphaproteobacteria
Mameliella alba DSM 26384 [QAOY]
354114
354038
-
Arg
CCG
[ENA]
¡û
>W1810721883
QNTQ01000001
Alphaproteobacteria
Rhodosalinus halophilus E84 [QNTQ]
351558
351482
-
Arg
CCG
[ENA]
¡û
>C151006157
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
2881605
2881529
-
Arg
CCG
[Ensembl]
¡û
>W2010406182
FWFN01000010
Alphaproteobacteria
Pseudooceanicola marinus CECT 7751 [FWFN]
10253
10177
-
Arg
CCG
[ENA]
¡û
>W2010468710
JAAGNU010000014
Alphaproteobacteria
Yangia sp. PrR004 [JAAGNU]
55420
55344
-
Arg
CCG
[ENA]
¡û
>W2010469703
JAAGOU010000013
Alphaproteobacteria
Yangia sp. PrR002 [JAAGOU]
75490
75566
+
Arg
CCG
[ENA]
¡û
>W2010469799
JAAGOV010000109
Alphaproteobacteria
Yangia sp. PrR003 [JAAGOV]
179673
179749
+
Arg
CCG
[ENA]
¡û
>W2010469979
JAAGOZ010000104
Alphaproteobacteria
Yangia sp. PrR007 [JAAGOZ]
1279
1203
-
Arg
CCG
[ENA]
¡û
>W2011153620
OBEA01000004
Alphaproteobacteria
Pseudooceanicola antarcticus CGMCC 1.12662 [OBEA]
213800
213876
+
Arg
CCG
[ENA]
¡û
>W2011403272
RCTZ02000001
Alphaproteobacteria
Tropicibacter sp. LMIT003 [RCTZ]
314912
314836
-
Arg
CCG
[ENA]
¡û
>W2011483010
RQXX01000001
Alphaproteobacteria
Tranquillimonas sp. M0103 [RQXX]
730801
730877
+
Arg
CCG
[ENA]
¡û
>W2011492191
RWGU01000049
Alphaproteobacteria
Rhodovulum robiginosum DSM 12329 [RWGU]
371238
371314
+
Arg
CCG
[ENA]
¡û
>W2011623159
SLXL01000004
Alphaproteobacteria
Rhodovulum adriaticum DSM 2781 [SLXL]
25503
25427
-
Arg
CCG
[ENA]
¡û
>W2011706688
SWKQ01000011
Alphaproteobacteria
Maritimibacter sp. LZ-17 [SWKQ]
645150
645226
+
Arg
CCG
[ENA]
¡û
>W2012015037
VFFF01000001
Alphaproteobacteria
Rhodobacteraceae bacterium SM1903 [VFFF]
528665
528589
-
Arg
CCG
[ENA]
¡û
>W2012097136
VNHV01000003
Alphaproteobacteria
Maritimibacter alkaliphilus HTCC2654 [VNHV]
481094
481170
+
Arg
CCG
[ENA]
¡û
>W2110023809
BMGI01000002
Alphaproteobacteria
Maritimibacter lacisalsi CGMCC 1.12922 [BMGI]
534263
534187
-
Arg
CCG
[ENA]
¡û
>W2110024128
BMGQ01000002
Alphaproteobacteria
Mameliella alba CGMCC 1.12986 [BMGQ]
353886
353810
-
Arg
CCG
[ENA]
¡û
>W2110051218
BNAB01000002
Alphaproteobacteria
Acidimangrovimonas indica CGMCC 1.10859 [BNAB]
306222
306298
+
Arg
CCG
[ENA]
¡û
>W2110650561
JAHUZE010000002
Alphaproteobacteria
Maritimibacter sp. DP4N28-5 [JAHUZE]
1089247
1089171
-
Arg
CCG
[ENA]
¡û
>W2110651949
JAHVIA010000005
Alphaproteobacteria
Salipiger bermudensis DP6N14-6 [JAHVIA]
25516
25440
-
Arg
CCG
[ENA]
¡û
>W2110654992
JAHVKE010000001
Alphaproteobacteria
Maritalea mobilis DP3N28-3 [JAHVKE]
664337
664261
-
Arg
CCG
[ENA]
¡û
>W2110701418
JAIUZV010000004
Alphaproteobacteria
Salipiger pacificus AmN0-18 [JAIUZV]
387909
387985
+
Arg
CCG
[ENA]
¡û
>W2110702010
JAIVAG010000001
Alphaproteobacteria
Salipiger pacificus AcN7-15 [JAIVAG]
416709
416785
+
Arg
CCG
[ENA]
¡û
>W2110706188
JAIVMC010000001
Alphaproteobacteria
Pseudooceanicola marinus SY-2-17 [JAIVMC]
332941
333017
+
Arg
CCG
[ENA]
¡û
>C211216932
CP065915
Alphaproteobacteria
Pelagovum pacificum SM1903 [CP065915]
1831076
1831152
+
Arg
CCG
-
¡û
>C231112668
CP067140
Alphaproteobacteria
Paracoccus saliphilus DSM 18447 [CP067140]
1599966
1599890
-
Arg
CCG
-
¡û
>C231271001
CP090152
Alphaproteobacteria
Roseivivax marinus TCYB24 [CP090152]
1429156
1429232
+
Arg
CCG
-
¡û
>W2110753513
NRRP01000002
Alphaproteobacteria
Rhodovulum adriaticum DSM 2781 [NRRP]
236851
236927
+
Arg
CCG
[ENA]
¡û
>C241094744
CP045318
Alphaproteobacteria
Roseivivax sp. THAF197b [CP045318]
1645583
1645659
+
Arg
CCG
-
¡û
>C241095509
CP045360
Alphaproteobacteria
Roseivivax sp. THAF40 [CP045360]
1678473
1678549
+
Arg
CCG
-
¡û
>WENV041155
AACY022138340
Marine microbial communities from Global Ocean Sampling (GOS)
641
565
-
Arg
CCG
[ENA]
>W1511387341
JSUQ01000012
Alphaproteobacteria
Mameliella alba UMTAT08 [JSUQ]
147418
147494
+
Arg
CCG
[ENA]
¡û
>W1610018440
AQQX01000003
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
627182
627106
-
Arg
CCG
[ENA]
¡û
>W1610845960
LPXO01000007
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
100123
100199
+
Arg
CCG
[ENA]
¡û
>W1710015656
AQQX01000003
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
627182
627106
-
Arg
CCG
[ENA]
¡û
>W1710512323
FMZI01000002
Alphaproteobacteria
Mameliella alba [FMZI]
147853
147929
+
Arg
CCG
[ENA]
¡û
>W1710516251
FNCL01000012
Alphaproteobacteria
Alloyangia pacifica [FNCL]
122633
122709
+
Arg
CCG
[ENA]
¡û
>W1710529537
FNOB01000002
Alphaproteobacteria
Allgaiera indica [FNOB]
25936
25860
-
Arg
CCG
[ENA]
¡û
>W1710572905
FOXA01000009
Alphaproteobacteria
Tranquillimonas alkanivorans [FOXA]
39640
39716
+
Arg
CCG
[ENA]
¡û
>W1710576242
FOZW01000012
Alphaproteobacteria
Alloyangia pacifica [FOZW]
122621
122697
+
Arg
CCG
[ENA]
¡û
>W1710595089
FSRS01000001
Alphaproteobacteria
Rhodovulum sp. ES.010 [FSRS]
658415
658491
+
Arg
CCG
[ENA]
¡û
>W1710599540
FTOU01000007
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
18687
18611
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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