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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.314365 (40 seq.)
>WENV180012773
FMSI01019452
[FMSI] soil metagenome; Soil
27474
27548
+
Trp
CCA
[ENA]
¡û
>W141038287
ALVL01000024
Cyanobacteriota
Pleurocapsa sp. PCC 7319 [ALVL]
2007880
2007954
+
Trp
CCA
[ENA]
¡û
>WENV181412107
OGCI01082794
[OGCI] hot springs metagenome; Hot spring water
164
90
-
Trp
CCA
[ENA]
¡û
>WENV181414326
OGCL01000212
[OGCL] hot springs metagenome; Hot spring water
65820
65746
-
Trp
CCA
[ENA]
¡û
>WENV170000773
AFSR01004108
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
16145
16220
+
Trp
CCA
[ENA]
¡û
>WENV170000944
AFSR01008783
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
811
735
-
Trp
CCA
[ENA]
¡û
>C181001766
AP017375
Cyanobacteriota
Stanieria sp. NIES-3757 [AP017375]
3630788
3630863
+
Trp
CCA
-
¡û
>C181005009
AP018281
Cyanobacteriota
Chondrocystis sp. NIES-4102 [AP018281]
1786395
1786470
+
Trp
CCA
-
¡û
>C181030468
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
1366622
1366696
+
Trp
CCA
-
¡û
>C191001224
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
1268985
1268911
-
Trp
CCA
-
¡û
>C191085226
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
2462302
2462228
-
Trp
CCA
-
¡û
>C141007953
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
687096
687022
-
Trp
CCA
-
¡û
>W2110312417
JADEXJ010000006
Cyanobacteriota
Pleurocapsales cyanobacterium LEGE 10410 [JADEXJ]
48144
48218
+
Trp
CCA
[ENA]
¡û
>W2110391988
JADWDC010000003
Cyanobacteriota
Waterburya agarophytonicola K14 KI4 [JADWDC]
4541
4467
-
Trp
CCA
[ENA]
¡û
>C201088937
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
1975567
1975641
+
Trp
CCA
-
¡û
>C211280921
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
647013
646939
-
Trp
CCA
-
¡û
>C231396175
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
2487899
2487825
-
Trp
CCA
-
¡û
>C241188877
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
2000491
2000565
+
Trp
CCA
-
¡û
>C241190855
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
1978831
1978905
+
Trp
CCA
-
¡û
>C241192271
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
1984046
1984120
+
Trp
CCA
-
¡û
>C241293670
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
644374
644300
-
Trp
CCA
-
¡û
>C241293692
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
2001819
2001893
+
Trp
CCA
-
¡û
>C241293746
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
642004
641930
-
Trp
CCA
-
¡û
>C241316058
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
637929
637855
-
Trp
CCA
-
¡û
>C241316172
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
642624
642550
-
Trp
CCA
-
¡û
>C241316210
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
653470
653396
-
Trp
CCA
-
¡û
>C241316286
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
653609
653535
-
Trp
CCA
-
¡û
>C241316324
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
653609
653535
-
Trp
CCA
-
¡û
>C241316362
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
653609
653535
-
Trp
CCA
-
¡û
>C241316400
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
645797
645723
-
Trp
CCA
-
¡û
>C241316438
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
645867
645793
-
Trp
CCA
-
¡û
>C241316476
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
645798
645724
-
Trp
CCA
-
¡û
>C241316514
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
652223
652149
-
Trp
CCA
-
¡û
>C241316590
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
642004
641930
-
Trp
CCA
-
¡û
>C241316650
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
2001819
2001893
+
Trp
CCA
-
¡û
>C241316688
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
2001819
2001893
+
Trp
CCA
-
¡û
>C241316790
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
1992278
1992352
+
Trp
CCA
-
¡û
>WENV11101116
AFSR01004108
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
16145
16220
+
Trp
CCA
[ENA]
¡û
>WENV11101287
AFSR01008783
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
811
735
-
Trp
CCA
[ENA]
¡û
>C131005035
CP003653
Cyanobacteriota
Stanieria cyanosphaera PCC 7437 [CP003653]
1963667
1963591
-
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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