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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.314571 (101 seq.)
>W131027536
AJAK01000017
Bacillota
Enterococcus malodoratus ATCC 43197 [AJAK]
322005
321931
-
Val
TAC
[ENA]
¡û
>W131027735
AJAP01000007
Bacillota
Enterococcus asini ATCC 700915 [AJAP]
2979
3053
+
Val
TAC
[ENA]
¡û
>W131031993
AJDQ01000007
Bacillota
Enterococcus gilvus ATCC BAA-350 [AJDQ]
396759
396833
+
Val
TAC
[ENA]
¡û
>W131200942
ASVU01000001
Bacillota
Enterococcus asini ATCC 700915 [ASVU]
774567
774493
-
Val
TAC
[ENA]
¡û
>W131200951
ASVU01000001
Bacillota
Enterococcus asini ATCC 700915 [ASVU]
561846
561772
-
Val
TAC
[ENA]
¡û
>W131200983
ASVU01000002
Bacillota
Enterococcus asini ATCC 700915 [ASVU]
943
1017
+
Val
TAC
[ENA]
¡û
>W131201500
ASWD01000002
Bacillota
Enterococcus pallens ATCC BAA-351 [ASWD]
1293617
1293543
-
Val
TAC
[ENA]
¡û
>W131201535
ASWD01000006
Bacillota
Enterococcus pallens ATCC BAA-351 [ASWD]
307874
307800
-
Val
TAC
[ENA]
¡û
>W131201813
ASWH01000001
Bacillota
Enterococcus gilvus ATCC BAA-350 [ASWH]
1770694
1770620
-
Val
TAC
[ENA]
¡û
>W131201941
ASWK01000001
Bacillota
Enterococcus dispar ATCC 51266 [ASWK]
2062290
2062364
+
Val
TAC
[ENA]
¡û
>W131201971
ASWK01000001
Bacillota
Enterococcus dispar ATCC 51266 [ASWK]
1717842
1717768
-
Val
TAC
[ENA]
¡û
>W131201990
ASWK01000001
Bacillota
Enterococcus dispar ATCC 51266 [ASWK]
752268
752194
-
Val
TAC
[ENA]
¡û
>W1711460397
MJEF01000004
Bacillota
Enterococcus casseliflavus [MJEF]
173561
173489
-
Val
TAC
[ENA]
¡û
>W1711460416
MJEF01000019
Bacillota
Enterococcus casseliflavus [MJEF]
73525
73451
-
Val
TAC
[ENA]
¡û
>W1712067121
NGKU01000001
Bacillota
Enterococcus sp. 8G7_MSG3316 [NGKU]
185516
185590
+
Val
TAC
[ENA]
¡û
>W1712067167
NGKU01000001
Bacillota
Enterococcus sp. 8G7_MSG3316 [NGKU]
2325953
2325881
-
Val
TAC
[ENA]
¡û
>W1712067606
NGLC01000001
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
2586
2660
+
Val
TAC
[ENA]
¡û
>W1712067627
NGLC01000001
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
778730
778802
+
Val
TAC
[ENA]
¡û
>W1712067642
NGLC01000002
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
261261
261187
-
Val
TAC
[ENA]
¡û
>W1712067831
NGLG01000001
Bacillota
Enterococcus sp. 3H8_DIV0648 [NGLG]
2807594
2807520
-
Val
TAC
[ENA]
¡û
>W1712067839
NGLG01000001
Bacillota
Enterococcus sp. 3H8_DIV0648 [NGLG]
2399985
2399911
-
Val
TAC
[ENA]
¡û
>W1712067863
NGLG01000001
Bacillota
Enterococcus sp. 3H8_DIV0648 [NGLG]
1278366
1278292
-
Val
TAC
[ENA]
¡û
>W1712067886
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
3474873
3474799
-
Val
TAC
[ENA]
¡û
>W1712067894
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
3228440
3228366
-
Val
TAC
[ENA]
¡û
>W1712067916
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
2446604
2446532
-
Val
TAC
[ENA]
¡û
>W1712068058
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
2949212
2949284
+
Val
TAC
[ENA]
¡û
>W1712068071
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
1854146
1854072
-
Val
TAC
[ENA]
¡û
>W1712068079
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
1582019
1581945
-
Val
TAC
[ENA]
¡û
>W1712068844
NGLY01000001
Bacillota
Enterococcus sp. 12E11_DIV0728 [NGLY]
814333
814407
+
Val
TAC
[ENA]
¡û
>W1712096897
NIBK01000001
Bacillota
Enterococcus sp. 12F9_DIV0723 [NIBK]
1966785
1966711
-
Val
TAC
[ENA]
¡û
>W1712097016
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
3613776
3613702
-
Val
TAC
[ENA]
¡û
>W1712097062
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
2799206
2799134
-
Val
TAC
[ENA]
¡û
>W1712097075
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
140631
140557
-
Val
TAC
[ENA]
¡û
>W131208740
ATID01000051
Bacillota
Enterococcus faecium 13.SD.W.09 [ATID]
276
348
+
Val
TAC
[ENA]
¡û
>W131209136
ATIM01000157
Bacillota
Enterococcus faecalis 06-MB-DW-09 [ATIM]
272
344
+
Val
TAC
[ENA]
¡û
>WENV180439773
OBWT01012775
[OBWT] human gut metagenome; faeces
134
62
-
Val
TAC
[ENA]
¢þ
>WENV180454279
OBXM01016742
[OBXM] human gut metagenome; faeces
681
607
-
Val
TAC
[ENA]
¢þ
>W141072060
ASKG01000009
Bacillota
Enterococcus sp. HSIEG1 [ASKG]
432
506
+
Val
TAC
[ENA]
¡û
>WENV182839767
OKHF01002950
[OKHF] human gut metagenome; human gut
378
452
+
Val
TAC
[ENA]
¢þ
>WENV182982164
OKZA01000254
[OKZA] human gut metagenome; human gut
174
100
-
Val
TAC
[ENA]
¢þ
>WENV170541603
CXPQ01001923
[CXPQ] human gut metagenome genome assembly hB10, contig; ENVO:feces
390
316
-
Val
TAC
[ENA]
¢þ
>WENV170544800
CXRP01002663
[CXRP] human gut metagenome genome assembly hF10, contig; ENVO:feces
1021
947
-
Val
TAC
[ENA]
¢þ
>WENV170545254
CXRX01001438
[CXRX] human gut metagenome genome assembly hG12, contig; ENVO:feces
5361
5435
+
Val
TAC
[ENA]
¢þ
>WENV170548563
CXUI01002227
[CXUI] Human gut metagenome genome assembly, contig: mD1_contig003205.; ENVO:feces
1915
1841
-
Val
TAC
[ENA]
¢þ
>W09115332
ACAH01000048
Bacillota
Enterococcus casseliflavus EC30 [ACAH]
242
314
+
Val
TAC
[ENA]
¡û
>W09115344
ACAH01000074
Bacillota
Enterococcus casseliflavus EC30 [ACAH]
16
90
+
Val
TAC
[ENA]
¡û
>W09115432
ACAJ01000048
Bacillota
Enterococcus gallinarum EG2 [ACAJ]
596
522
-
Val
TAC
[ENA]
¡û
>W09115520
ACAL01000035
Bacillota
Enterococcus casseliflavus EC10 [ACAL]
242
314
+
Val
TAC
[ENA]
¡û
>W09115532
ACAL01000051
Bacillota
Enterococcus casseliflavus EC10 [ACAL]
597
523
-
Val
TAC
[ENA]
¡û
>C181194602
CP030932
Bacillota
Enterococcus gilvus CR1 [CP030932]
1337662
1337588
-
Val
TAC
-
¡û
>C191094121
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
822249
822323
+
Val
TAC
-
¡û
>C191094130
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
1076595
1076669
+
Val
TAC
-
¡û
>C191094163
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
1839621
1839693
+
Val
TAC
-
¡û
>W141818800
JQLU01000003
Bacillota
Carnobacterium gallinarum DSM 4847 [JQLU]
367733
367658
-
Val
TAC
[ENA]
¡û
>W141818830
JQLU01000005
Bacillota
Carnobacterium gallinarum DSM 4847 [JQLU]
660187
660112
-
Val
TAC
[ENA]
¡û
>W141818852
JQLU01000005
Bacillota
Carnobacterium gallinarum DSM 4847 [JQLU]
76121
76047
-
Val
TAC
[ENA]
¡û
>W1910175447
BJCC01000062
Bacillota
Enterococcus florum Gos25-1 [BJCC]
596
522
-
Val
TAC
[ENA]
¡û
>W1910177942
BJED01000011
Bacillota
Enterococcus hulanensis 190-7 [BJED]
142294
142220
-
Val
TAC
[ENA]
¡û
>W1910181715
BJMG01000029
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
14096
14024
-
Val
TAC
[ENA]
¡û
>W1910181725
BJMG01000049
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
16
90
+
Val
TAC
[ENA]
¡û
>W1910609874
LERZ01000002
Bacillota
Enterococcus gallinarum 298EA1 [LERZ]
1919
1993
+
Val
TAC
[ENA]
¡û
>W1910609882
LERZ01000004
Bacillota
Enterococcus gallinarum 298EA1 [LERZ]
968
1042
+
Val
TAC
[ENA]
¡û
>W1910609917
LERZ01000020
Bacillota
Enterococcus gallinarum 298EA1 [LERZ]
190413
190339
-
Val
TAC
[ENA]
¡û
>W1910617285
LHUG01000016
Bacillota
Enterococcus canintestini 49 [LHUG]
110
36
-
Val
TAC
[ENA]
¡û
>W1910617289
LHUG01000018
Bacillota
Enterococcus canintestini 49 [LHUG]
40128
40054
-
Val
TAC
[ENA]
¡û
>W1911710300
QPQX01000013
Bacillota
Enterococcus sp. ARL09-542 [QPQX]
93
167
+
Val
TAC
[ENA]
¡û
>W1810237767
PPHK01000005
Bacillota
Enterococcus gallinarum EG1 [PPHK]
240069
239995
-
Val
TAC
[ENA]
¡û
>W1810793562
QRJU01000012
Bacillota
Enterococcus casseliflavus AM17-31 [QRJU]
111368
111296
-
Val
TAC
[ENA]
¡û
>W1810798140
QRMZ01000011
Bacillota
Enterococcus casseliflavus AF48-16 [QRMZ]
126
198
+
Val
TAC
[ENA]
¡û
>W1810813852
QRZW01000003
Bacillota
Enterococcus asini AF13-3-H [QRZW]
331
405
+
Val
TAC
[ENA]
¡û
>W1810813882
QRZW01000013
Bacillota
Enterococcus asini AF13-3-H [QRZW]
307
381
+
Val
TAC
[ENA]
¡û
>W1810907693
QVHY01000006
Bacillota
Enterococcus gallinarum OF05-6AC [QVHY]
75
149
+
Val
TAC
[ENA]
¡û
>W1510079454
CDRD01001772
Bacillota
Enterococcus casseliflavus 3h10B [CDRD]
169
243
+
Val
TAC
[ENA]
¡û
>W1510079482
CDRD01002236
Bacillota
Enterococcus casseliflavus 3h10B [CDRD]
125
51
-
Val
TAC
[ENA]
¡û
>W1510079498
CDRD01002654
Bacillota
Enterococcus casseliflavus 3h10B [CDRD]
348
276
-
Val
TAC
[ENA]
¡û
>W1510079508
CDRE01000263
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
1886
1814
-
Val
TAC
[ENA]
¡û
>W1510079546
CDRE01001595
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
5421
5495
+
Val
TAC
[ENA]
¡û
>W1510079555
CDRE01001902
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
959
885
-
Val
TAC
[ENA]
¡û
>W1511187730
JMGP01000012
Bacillota
Enterococcus gallinarum A6981 [JMGP]
93
167
+
Val
TAC
[ENA]
¡û
>C161066322
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
2147663
2147735
+
Val
TAC
[Ensembl]
¡û
>C161066337
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
1029312
1029238
-
Val
TAC
[Ensembl]
¡û
>C161066346
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
723010
722936
-
Val
TAC
[Ensembl]
¡û
>W121001895
ADLY01000053
Bacillota
Enterococcus saccharolyticus 30_1 [ADLY]
3774
3848
+
Val
TAC
[ENA]
¡û
>W121001896
ADLY01000059
Bacillota
Enterococcus saccharolyticus 30_1 [ADLY]
588
514
-
Val
TAC
[ENA]
¡û
>W1610066459
BCPT01000009
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
145134
145062
-
Val
TAC
[ENA]
¡û
>W1610066496
BCPT01000052
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
515
441
-
Val
TAC
[ENA]
¡û
>W1610066972
BCQE01000085
Bacillota
Enterococcus gallinarum NBRC 100675 [BCQE]
595
521
-
Val
TAC
[ENA]
¡û
>W1610620469
LHOX01000009
Bacillota
Enterococcus sp. RIT-PI-f [LHOX]
143
217
+
Val
TAC
[ENA]
¡û
>W1610620482
LHOX01000015
Bacillota
Enterococcus sp. RIT-PI-f [LHOX]
143
217
+
Val
TAC
[ENA]
¡û
>W1610620511
LHOX01000018
Bacillota
Enterococcus sp. RIT-PI-f [LHOX]
448
522
+
Val
TAC
[ENA]
¡û
>WENV085316
BABC01000359
Gut microbiome of Human (healthy human sample In-B, Infant, Male)
5061
5138
+
Val
TAC
[ENA]
>WENV085413
BABC01005691
Gut microbiome of Human (healthy human sample In-B, Infant, Male)
493
418
-
Val
TAC
[ENA]
>W1710063797
BCPT01000009
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
145134
145062
-
Val
TAC
[ENA]
¡û
>W1710063834
BCPT01000052
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
515
441
-
Val
TAC
[ENA]
¡û
>W1710064403
BCQE01000085
Bacillota
Enterococcus gallinarum NBRC 100675 [BCQE]
595
521
-
Val
TAC
[ENA]
¡û
>W1710659290
JXKM01000040
Bacillota
Enterococcus devriesei [JXKM]
259
333
+
Val
TAC
[ENA]
¡û
>W1710659395
JXKP01000017
Bacillota
Enterococcus gallinarum [JXKP]
72871
72797
-
Val
TAC
[ENA]
¡û
>W1710659668
JXKX01000023
Bacillota
Enterococcus pallens [JXKX]
34
108
+
Val
TAC
[ENA]
¡û
>W1710748163
LHOX01000009
Bacillota
Enterococcus sp. RIT-PI-f [LHOX]
143
217
+
Val
TAC
[ENA]
¡û
>W1710748176
LHOX01000015
Bacillota
Enterococcus sp. RIT-PI-f [LHOX]
143
217
+
Val
TAC
[ENA]
¡û
>W1710748205
LHOX01000018
Bacillota
Enterococcus sp. RIT-PI-f [LHOX]
448
522
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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