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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315138 (74 seq.)
>W1712077014
NGUO01000002
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
367077
367152
+
Thr
TGT
[ENA]
¡û
>W1712077015
NGUO01000002
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
359634
359559
-
Thr
TGT
[ENA]
¡û
>C017372
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
123899
123974
+
Thr
TGT
[Ensembl]
¡û
>WENV016243
AACY020458977
Marine microbial communities from Global Ocean Sampling (GOS)
1366
1289
-
Thr
TGT
[ENA]
>WENV180214775
OBAP01076509
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
41
116
+
Thr
TGT
[ENA]
¡û
>WENV180590215
OCOS01157165
[OCOS] marine metagenome; Sterile flask
106
31
-
Thr
TGT
[ENA]
¡û
>WENV181309604
OFIW01012062
[OFIW] marine metagenome; seawater
249
174
-
Thr
TGT
[ENA]
¡û
>WENV181324774
OFLH01005347
[OFLH] marine metagenome; sea ice
588
513
-
Thr
TGT
[ENA]
¡û
>WENV182562153
OJDY01027812
[OJDY] seawater metagenome; Sea water
153
78
-
Thr
TGT
[ENA]
¡û
>WENV182576718
OJFY01002623
[OJFY] seawater metagenome; Sea water
1463
1388
-
Thr
TGT
[ENA]
¡û
>WENV182579426
OJGS01009424
[OJGS] seawater metagenome; Sea water
532
607
+
Thr
TGT
[ENA]
¡û
>WENV182583520
OJHD01025531
[OJHD] seawater metagenome; Sea water
402
477
+
Thr
TGT
[ENA]
¡û
>WENV001869
AACY020053243
Marine microbial communities from Global Ocean Sampling (GOS)
477
402
-
Thr
TGT
[ENA]
>WENV170146897
CENZ01093059
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
195
120
-
Thr
TGT
[ENA]
¡û
>WENV170312143
CESM01222990
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
992
1067
+
Thr
TGT
[ENA]
¡û
>WENV170324872
CESS01149829
[CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
199
124
-
Thr
TGT
[ENA]
¡û
>WENV170601171
FUWD010159467
[FUWD] metagenome; unknown
99
24
-
Thr
TGT
[ENA]
¡û
>WENV170618827
FUWD012988282
[FUWD] metagenome; unknown
232
157
-
Thr
TGT
[ENA]
¡û
>WENV170821041
MDSY01015445
[MDSY] marine metagenome; seawater
87
12
-
Thr
TGT
[ENA]
¡û
>WENV170857222
MDTB01005925
[MDTB] marine metagenome; seawater
5718
5643
-
Thr
TGT
[ENA]
¡û
>WENV170887117
MDTC01234164
[MDTC] marine metagenome; seawater
3562
3637
+
Thr
TGT
[ENA]
¡û
>WENV170920245
MDTF01016408
[MDTF] marine metagenome; seawater
7424
7349
-
Thr
TGT
[ENA]
¡û
>WENV170927415
MDTG01116825
[MDTG] marine metagenome; seawater
2675
2750
+
Thr
TGT
[ENA]
¡û
>WENV170950471
MEHZ011498590
[MEHZ] marine metagenome; marine surface water
426
501
+
Thr
TGT
[ENA]
¡û
>WENV170952545
MEHZ011603331
[MEHZ] marine metagenome; marine surface water
1501
1576
+
Thr
TGT
[ENA]
¡û
>WENV170952831
MEHZ011616732
[MEHZ] marine metagenome; marine surface water
81
6
-
Thr
TGT
[ENA]
¡û
>WENV170953055
MEHZ011626561
[MEHZ] marine metagenome; marine surface water
1209
1284
+
Thr
TGT
[ENA]
¡û
>W09106296
AAUC01000010
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
56959
57034
+
Thr
TGT
[ENA]
¡û
>C181218921
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
1672228
1672303
+
Thr
TGT
-
¡û
>C181218969
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
59956
60031
+
Thr
TGT
-
¡û
>C181219051
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
761185
761260
+
Thr
TGT
-
¡û
>WENV026100
AACY020940355
Marine microbial communities from Global Ocean Sampling (GOS)
571
646
+
Thr
TGT
[ENA]
>SRA1023919
SRR035084.207875
454 Sequencing (SRP001805)
124
49
-
Thr
TGT
[SRA]
>SRA1024540
SRR035084.345936
454 Sequencing (SRP001805)
257
182
-
Thr
TGT
[SRA]
>SRA1025153
SRR035084.500441
454 Sequencing (SRP001805)
150
75
-
Thr
TGT
[SRA]
>SRA1025193
SRR035084.512038
454 Sequencing (SRP001805)
258
183
-
Thr
TGT
[SRA]
>WENV030984
AACY021328401
Marine microbial communities from Global Ocean Sampling (GOS)
554
629
+
Thr
TGT
[ENA]
>SRA1046436
SRR035093.306167
454 Sequencing (SRP001814)
301
226
-
Thr
TGT
[SRA]
>SRA1051588
SRR035098.35670
454 Sequencing (SRP001819)
99
24
-
Thr
TGT
[SRA]
>SRA1052957
SRR035098.308409
454 Sequencing (SRP001819)
275
200
-
Thr
TGT
[SRA]
>W2110145171
JAANFB010000001
Betaproteobacteria
Polynucleobacter paneuropaeus AP-SaBe1-20-A5 [JAANFB]
763866
763941
+
Thr
TGT
[ENA]
¡û
>W2110145412
JAANFH010000001
Betaproteobacteria
Polynucleobacter paneuropaeus JS-Pas2-20-A10 [JAANFH]
1384967
1385042
+
Thr
TGT
[ENA]
¡û
>W2110145446
JAANFI010000001
Betaproteobacteria
Polynucleobacter paneuropaeus AP-Npozz1-10B-G10 [JAANFI]
507183
507258
+
Thr
TGT
[ENA]
¡û
>W2110145719
JAANFP010000001
Betaproteobacteria
Polynucleobacter paneuropaeus JS-Kaija-80-A1 [JAANFP]
1380816
1380891
+
Thr
TGT
[ENA]
¡û
>W2110145797
JAANFR010000001
Betaproteobacteria
Polynucleobacter paneuropaeus JS-Suoal-20-A4 [JAANFR]
1585883
1585958
+
Thr
TGT
[ENA]
¡û
>W2110146163
JAANGA010000004
Betaproteobacteria
Polynucleobacter paneuropaeus AP-Hutt-20-G10 [JAANGA]
149430
149505
+
Thr
TGT
[ENA]
¡û
>W2110146293
JAANGE010000001
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NE-20 [JAANGE]
774462
774537
+
Thr
TGT
[ENA]
¡û
>W2110146346
JAANGF010000002
Betaproteobacteria
Polynucleobacter paneuropaeus AP-EnzGG-20-H1 [JAANGF]
139396
139471
+
Thr
TGT
[ENA]
¡û
>W2110146585
JAANGL010000001
Betaproteobacteria
Polynucleobacter paneuropaeus AP-YLGG-20-B7 [JAANGL]
493904
493829
-
Thr
TGT
[ENA]
¡û
>W2110146713
JAANGP010000001
Betaproteobacteria
Polynucleobacter paneuropaeus AP-Roav5-40-G11 [JAANGP]
169632
169707
+
Thr
TGT
[ENA]
¡û
>W2110146782
JAANGQ010000001
Betaproteobacteria
Polynucleobacter paneuropaeus AP-RamGG-20A-F11 [JAANGQ]
338168
338093
-
Thr
TGT
[ENA]
¡û
>W2110146820
JAANGR010000002
Betaproteobacteria
Polynucleobacter paneuropaeus AP-RamGG-20A-D10 [JAANGR]
303052
302977
-
Thr
TGT
[ENA]
¡û
>W2110147089
JAANGY010000004
Betaproteobacteria
Polynucleobacter paneuropaeus AP-ClouGG-20-D9 [JAANGY]
206325
206250
-
Thr
TGT
[ENA]
¡û
>W2110147203
JAANHB010000004
Betaproteobacteria
Polynucleobacter paneuropaeus AP-ClouGG-20-B4 [JAANHB]
206325
206250
-
Thr
TGT
[ENA]
¡û
>W2110147231
JAANHC010000003
Betaproteobacteria
Polynucleobacter paneuropaeus AP-ClouGG-20-A8 [JAANHC]
206325
206250
-
Thr
TGT
[ENA]
¡û
>W2110147335
JAANHF010000001
Betaproteobacteria
Polynucleobacter paneuropaeus AP-AinPum-20-D2 [JAANHF]
312232
312157
-
Thr
TGT
[ENA]
¡û
>W2110272824
JACVPC010000001
Betaproteobacteria
Polynucleobacter sp. AP-RePozz3-80-G7 [JACVPC]
366098
366173
+
Thr
TGT
[ENA]
¡û
>W2110273030
JACVPH010000004
Betaproteobacteria
Polynucleobacter sp. JS-Fieb-80-E5 [JACVPH]
144561
144636
+
Thr
TGT
[ENA]
¡û
>W2110273352
JACVPQ010000001
Betaproteobacteria
Polynucleobacter sp. MWH-Jannik1A5 [JACVPQ]
971323
971398
+
Thr
TGT
[ENA]
¡û
>W2110273500
JACVPU010000001
Betaproteobacteria
Polynucleobacter sp. Nonnen-W13 [JACVPU]
146019
146094
+
Thr
TGT
[ENA]
¡û
>W2110273844
JACVQD010000001
Betaproteobacteria
Polynucleobacter sp. UK-Pondora-W15 [JACVQD]
1401422
1401497
+
Thr
TGT
[ENA]
¡û
>C211079656
CP049683
Betaproteobacteria
Polynucleobacter paneuropaeus AP-RePozz10-5-G5 [CP049683]
117930
118005
+
Thr
TGT
-
¡û
>C211144660
CP061287
Betaproteobacteria
Polynucleobacter sp. MWH-Aus1W21 [CP061287]
122257
122332
+
Thr
TGT
-
¡û
>C211144698
CP061289
Betaproteobacteria
Polynucleobacter sp. UB-Siik-W21 [CP061289]
118391
118466
+
Thr
TGT
-
¡û
>C211144958
CP061297
Betaproteobacteria
Polynucleobacter asymbioticus MWH-MoIso1 [CP061297]
113039
113114
+
Thr
TGT
-
¡û
>C211144995
CP061298
Betaproteobacteria
Polynucleobacter asymbioticus MWH-Mekk-C3 [CP061298]
115476
115551
+
Thr
TGT
-
¡û
>C211145366
CP061318
Betaproteobacteria
Polynucleobacter sp. AP-Ainpum-60-G11 [CP061318]
119852
119927
+
Thr
TGT
-
¡û
>C241010884
AP027274
Betaproteobacteria
Polynucleobacter sp. TUM22923 [AP027274]
116374
116449
+
Thr
TGT
-
¡û
>C241031792
CP028941
Betaproteobacteria
Polynucleobacter antarcticus LimPoW16 [CP028941]
114411
114486
+
Thr
TGT
-
¡û
>WENV055042
AACY023208761
Marine microbial communities from Global Ocean Sampling (GOS)
80
155
+
Thr
TGT
[ENA]
>WENV055577
AACY023232014
Marine microbial communities from Global Ocean Sampling (GOS)
815
740
-
Thr
TGT
[ENA]
>C161092370
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
122086
122161
+
Thr
TGT
[Ensembl]
¡û
>WENV058487
AACY023330785
Marine microbial communities from Global Ocean Sampling (GOS)
1006
1083
+
Thr
TGT
[ENA]
>WENV000556
AACY020016789
Marine microbial communities from Global Ocean Sampling (GOS)
1519
1594
+
Thr
TGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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