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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315831 (100 seq.)
>W1710885806
LMXL01000096
Gammaproteobacteria
Escherichia coli O157:H7 [LMXL]
126008
126083
+
Asp
GTC
[ENA]
¡û
>W1710923345
LOBN01000007
Gammaproteobacteria
Enterobacter cloacae [LOBN]
949850
949775
-
Asp
GTC
[ENA]
¡û
>W1710923346
LOBN01000007
Gammaproteobacteria
Enterobacter cloacae [LOBN]
940419
940344
-
Asp
GTC
[ENA]
¡û
>W1710946212
LORW01000002
Gammaproteobacteria
Klebsiella pneumoniae [LORW]
2319300
2319375
+
Asp
GTC
[ENA]
¡û
>W1711144453
LVIE01000112
Gammaproteobacteria
Providencia stuartii [LVIE]
168606
168531
-
Asp
GTC
[ENA]
¡û
>W1711293232
LZYN01000166
Gammaproteobacteria
Klebsiella pneumoniae [LZYN]
9869
9944
+
Asp
GTC
[ENA]
¡û
>W1711903120
MZMS01000008
Gammaproteobacteria
Klebsiella pneumoniae [MZMS]
1642253
1642178
-
Asp
GTC
[ENA]
¡û
>C171018164
CP012597
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Newport 0112-791 [CP012597]
1804441
1804366
-
Asp
GTC
-
¡û
>C171032803
CP014670
Gammaproteobacteria
Escherichia coli CFSAN004177 [CP014670]
3388662
3388737
+
Asp
GTC
-
¡û
>C171054331
CP016952
Gammaproteobacteria
Citrobacter freundii SL151 [CP016952]
6291
6216
-
Asp
GTC
-
¡û
>C008896
BA000007
Gammaproteobacteria
Escherichia coli O157:H7 str. Sakai [BA000007]
4740317
4740392
+
Asp
GTC
[Ensembl]
¡û
>C181005105
AP018340
Gammaproteobacteria
Enterobacter cloacae subsp. cloacae 2016_smu953 [AP018340]
184292
184367
+
Asp
GTC
-
¡û
>C181005140
AP018340
Gammaproteobacteria
Enterobacter cloacae subsp. cloacae 2016_smu953 [AP018340]
3987671
3987596
-
Asp
GTC
-
¡û
>C181005141
AP018340
Gammaproteobacteria
Enterobacter cloacae subsp. cloacae 2016_smu953 [AP018340]
3978322
3978247
-
Asp
GTC
-
¡û
>C181041687
CP019899
Gammaproteobacteria
Raoultella planticola GODA [CP019899]
4559363
4559288
-
Asp
GTC
-
¡û
>C181058363
CP022114
Gammaproteobacteria
Kluyvera genomosp. 3 YDC799 [CP022114]
4826429
4826354
-
Asp
GTC
-
¡û
>C181058380
CP022114
Gammaproteobacteria
Kluyvera genomosp. 3 YDC799 [CP022114]
3968176
3968101
-
Asp
GTC
-
¡û
>C181058381
CP022114
Gammaproteobacteria
Kluyvera genomosp. 3 YDC799 [CP022114]
3959553
3959478
-
Asp
GTC
-
¡û
>C181140139
CP026777
Gammaproteobacteria
Shigella dysenteriae 69-3818 [CP026777]
2423692
2423767
+
Asp
GTC
-
¡û
>C181140140
CP026777
Gammaproteobacteria
Shigella dysenteriae 69-3818 [CP026777]
2431897
2431972
+
Asp
GTC
-
¡û
>C181140963
CP026797
Gammaproteobacteria
Shigella boydii NCTC 9353 [CP026797]
4107266
4107341
+
Asp
GTC
-
¡û
>C181141804
CP026815
Gammaproteobacteria
Shigella dysenteriae 93-119 [CP026815]
3676389
3676314
-
Asp
GTC
-
¡û
>C181142068
CP026824
Gammaproteobacteria
Shigella dysenteriae CFSAN010954 [CP026824]
1311453
1311378
-
Asp
GTC
-
¡û
>C181142069
CP026824
Gammaproteobacteria
Shigella dysenteriae CFSAN010954 [CP026824]
1303234
1303159
-
Asp
GTC
-
¡û
>C181142115
CP026825
Gammaproteobacteria
Shigella dysenteriae ATCC 9751 [CP026825]
1781410
1781485
+
Asp
GTC
-
¡û
>C181142491
CP026832
Gammaproteobacteria
Shigella dysenteriae ATCC 49346 [CP026832]
4618922
4618997
+
Asp
GTC
-
¡û
>C181143043
CP026845
Gammaproteobacteria
Shigella boydii NCTC 9733 [CP026845]
1861290
1861215
-
Asp
GTC
-
¡û
>C181145406
CP027104
Gammaproteobacteria
Escherichia coli RM14715 [CP027104]
981464
981539
+
Asp
GTC
-
¡û
>C181157375
CP027597
Gammaproteobacteria
Escherichia coli 86-3153 [CP027597]
1972760
1972685
-
Asp
GTC
-
¡û
>C181158878
CP027697
Gammaproteobacteria
Klebsiella pneumoniae KP30835 [CP027697]
926833
926908
+
Asp
GTC
-
¡û
>C181199873
CP031368
Gammaproteobacteria
Klebsiella pneumoniae KpvST101_OXA-48 [CP031368]
3223273
3223198
-
Asp
GTC
-
¡û
>C181199893
CP031368
Gammaproteobacteria
Klebsiella pneumoniae KpvST101_OXA-48 [CP031368]
2341270
2341195
-
Asp
GTC
-
¡û
>C181202749
CP031609
Gammaproteobacteria
Escherichia coli N3 [CP031609]
4765055
4764980
-
Asp
GTC
-
¡û
>C181221592
LT904867
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi ERL034151 [LT904867]
4581958
4581883
-
Asp
GTC
-
¡û
>C181223218
LT904894
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi ERL12960 [LT904894]
4555372
4555297
-
Asp
GTC
-
¡û
>C191020818
CP022609
Gammaproteobacteria
Escherichia coli ATCC 700415 [CP022609]
1585446
1585521
+
Asp
GTC
-
¡û
>C191020844
CP022609
Gammaproteobacteria
Escherichia coli ATCC 700415 [CP022609]
5174396
5174321
-
Asp
GTC
-
¡û
>C191160435
CP038471
Gammaproteobacteria
Enterobacter roggenkampii BP10374 [CP038471]
2717957
2718032
+
Asp
GTC
-
¡û
>C191186136
CP041054
Gammaproteobacteria
Enterobacter hormaechei C126 [CP041054]
3162698
3162773
+
Asp
GTC
-
¡û
>C191186174
CP041054
Gammaproteobacteria
Enterobacter hormaechei C126 [CP041054]
2034514
2034439
-
Asp
GTC
-
¡û
>C191186175
CP041054
Gammaproteobacteria
Enterobacter hormaechei C126 [CP041054]
2025147
2025072
-
Asp
GTC
-
¡û
>C191196950
LR134145
Gammaproteobacteria
Salmonella enterica subsp. enterica NCTC6017 [LR134145]
3639693
3639618
-
Asp
GTC
-
¡û
>C191197173
LR134148
Gammaproteobacteria
Salmonella enterica subsp. enterica NCTC8271 [LR134148]
4471642
4471567
-
Asp
GTC
-
¡û
>C191197358
LR134150
Gammaproteobacteria
Salmonella enterica subsp. arizonae NCTC7306 [LR134150]
3555990
3555915
-
Asp
GTC
-
¡û
>C191197856
LR134156
Gammaproteobacteria
Salmonella enterica subsp. arizonae NCTC10047 [LR134156]
3865401
3865326
-
Asp
GTC
-
¡û
>C191201674
LR134233
Gammaproteobacteria
Salmonella enterica subsp. enterica NCTC9684 [LR134233]
4554967
4554892
-
Asp
GTC
-
¡û
>W141700737
JMJE01000024
Gammaproteobacteria
Escherichia coli [JMJE]
5550
5625
+
Asp
GTC
[ENA]
¡û
>W1930024601
NLOP01000054
Gammaproteobacteria
Escherichia coli MOD1-EC5472 [NLOP]
102
177
+
Asp
GTC
[ENA]
¡û
>W1930024859
NLPM01000072
Gammaproteobacteria
Escherichia coli MOD1-EC5440 [NLPM]
76
1
-
Asp
GTC
[ENA]
¡û
>W1911019121
NLNO01000036
Gammaproteobacteria
Escherichia coli MOD1-EC5502 [NLNO]
102
178
+
Asp
GTC
[ENA]
¡û
>W1911020754
NLOP01000018
Gammaproteobacteria
Escherichia coli MOD1-EC5472 [NLOP]
93009
92934
-
Asp
GTC
[ENA]
¡û
>W1911021552
NLPC01000001
Gammaproteobacteria
Escherichia coli MOD1-EC5454 [NLPC]
329
404
+
Asp
GTC
[ENA]
¡û
>W1911022019
NLPL01000038
Gammaproteobacteria
Escherichia coli MOD1-EC5441 [NLPL]
102
178
+
Asp
GTC
[ENA]
¡û
>W1911022044
NLPM01000018
Gammaproteobacteria
Escherichia coli MOD1-EC5440 [NLPM]
220
296
+
Asp
GTC
[ENA]
¡û
>W1911022056
NLPM01000072
Gammaproteobacteria
Escherichia coli MOD1-EC5440 [NLPM]
8163
8088
-
Asp
GTC
[ENA]
¡û
>W1911022086
NLPN01000051
Gammaproteobacteria
Escherichia coli MOD1-EC5439 [NLPN]
31820
31745
-
Asp
GTC
[ENA]
¡û
>W1911022087
NLPN01000051
Gammaproteobacteria
Escherichia coli MOD1-EC5439 [NLPN]
23734
23659
-
Asp
GTC
[ENA]
¡û
>W1911022167
NLPP01000021
Gammaproteobacteria
Escherichia coli MOD1-EC5436 [NLPP]
390
465
+
Asp
GTC
[ENA]
¡û
>W1911022175
NLPP01000056
Gammaproteobacteria
Escherichia coli MOD1-EC5436 [NLPP]
31195
31120
-
Asp
GTC
[ENA]
¡û
>W1911022234
NLPR01000055
Gammaproteobacteria
Escherichia coli MOD1-EC5431 [NLPR]
7293
7368
+
Asp
GTC
[ENA]
¡û
>W1911208256
NRKO01000032
Gammaproteobacteria
Cronobacter sakazakii cro1164W [NRKO]
1694
1619
-
Asp
GTC
[ENA]
¡û
>W1911208709
NRKV01000002
Gammaproteobacteria
Cronobacter sakazakii cro780C3-2 [NRKV]
1020444
1020369
-
Asp
GTC
[ENA]
¡û
>W1911208759
NRKV01000087
Gammaproteobacteria
Cronobacter sakazakii cro780C3-2 [NRKV]
51
126
+
Asp
GTC
[ENA]
¡û
>W1911209866
NRLL01000015
Gammaproteobacteria
Cronobacter sakazakii 494G [NRLL]
89467
89392
-
Asp
GTC
[ENA]
¡û
>W1911209876
NRLL01000026
Gammaproteobacteria
Cronobacter sakazakii 494G [NRLL]
48096
48021
-
Asp
GTC
[ENA]
¡û
>W1911209995
NRLN01000017
Gammaproteobacteria
Cronobacter sakazakii 492G [NRLN]
89830
89755
-
Asp
GTC
[ENA]
¡û
>W1911210029
NRLN01000132
Gammaproteobacteria
Cronobacter sakazakii 492G [NRLN]
23
98
+
Asp
GTC
[ENA]
¡û
>W1911210156
NRLP01000048
Gammaproteobacteria
Cronobacter sakazakii 487G [NRLP]
8532
8607
+
Asp
GTC
[ENA]
¡û
>W1911210408
NRLT01000016
Gammaproteobacteria
Cronobacter sakazakii 467G [NRLT]
88989
88914
-
Asp
GTC
[ENA]
¡û
>W1911210429
NRLT01000039
Gammaproteobacteria
Cronobacter sakazakii 467G [NRLT]
34373
34298
-
Asp
GTC
[ENA]
¡û
>W1911210467
NRLU01000014
Gammaproteobacteria
Cronobacter sakazakii 466G [NRLU]
89166
89091
-
Asp
GTC
[ENA]
¡û
>W1911210478
NRLU01000017
Gammaproteobacteria
Cronobacter sakazakii 466G [NRLU]
326
401
+
Asp
GTC
[ENA]
¡û
>W1911283051
NTIU01000032
Gammaproteobacteria
Escherichia coli RCE05_s24 [NTIU]
8144
8219
+
Asp
GTC
[ENA]
¡û
>W1911430623
NXKW01000676
Gammaproteobacteria
Klebsiella pneumoniae ST-234:K054 [NXKW]
424
349
-
Asp
GTC
[ENA]
¡û
>W1911430641
NXKW01001006
Gammaproteobacteria
Klebsiella pneumoniae ST-234:K054 [NXKW]
206
131
-
Asp
GTC
[ENA]
¡û
>W1911430986
NXLA01000980
Gammaproteobacteria
Klebsiella pneumoniae K123 [NXLA]
141
66
-
Asp
GTC
[ENA]
¡û
>W1911431065
NXLB01000621
Gammaproteobacteria
Klebsiella pneumoniae ST-101:K126 [NXLB]
206
131
-
Asp
GTC
[ENA]
¡û
>W1810329801
PUIF01000171
Gammaproteobacteria
Klebsiella pneumoniae BA1790 [PUIF]
9468
9543
+
Asp
GTC
[ENA]
¡û
>SRA1004868
SRR006906.166289
metagenomic water samples (SRP000427)
197
122
-
Asp
GTC
[SRA]
>W1810368812
PVZZ01000001
Gammaproteobacteria
Escherichia coli 2012C-4196 [PVZZ]
2910118
2910043
-
Asp
GTC
[ENA]
¡û
>C151054304
CP009565
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Newport str. CVM 21554 [CP009565]
2464208
2464133
-
Asp
GTC
[Ensembl]
¡û
>W11138303
AEIA01000030
Gammaproteobacteria
Escherichia fergusonii B253 [AEIA]
78
3
-
Asp
GTC
[ENA]
¡û
>W11172729
AFST01000018
Gammaproteobacteria
Escherichia coli O104:H4 str. C227-11 [AFST]
93743
93668
-
Asp
GTC
[ENA]
¡û
>C161027925
CP010512
Gammaproteobacteria
Enterobacter cloacae colR/S [CP010512]
5901
5826
-
Asp
GTC
-
¡û
>W1610578075
LAWZ01000131
Gammaproteobacteria
Escherichia coli [LAWZ]
10907
10832
-
Asp
GTC
[ENA]
¡û
>W1610578076
LAWZ01000131
Gammaproteobacteria
Escherichia coli [LAWZ]
2901
2826
-
Asp
GTC
[ENA]
¡û
>W1610578097
LAXA01000011
Gammaproteobacteria
Escherichia coli [LAXA]
424
499
+
Asp
GTC
[ENA]
¡û
>W1610578140
LAXA01000031
Gammaproteobacteria
Escherichia coli [LAXA]
456627
456552
-
Asp
GTC
[ENA]
¡û
>W1610578141
LAXA01000031
Gammaproteobacteria
Escherichia coli [LAXA]
448398
448323
-
Asp
GTC
[ENA]
¡û
>W1610578187
LAXB01000015
Gammaproteobacteria
Escherichia coli [LAXB]
92320
92245
-
Asp
GTC
[ENA]
¡û
>W1610747732
LMXL01000096
Gammaproteobacteria
Escherichia coli O157:H7 [LMXL]
126008
126083
+
Asp
GTC
[ENA]
¡û
>W1610780824
LOBN01000007
Gammaproteobacteria
Enterobacter cloacae [LOBN]
949850
949775
-
Asp
GTC
[ENA]
¡û
>W1610780825
LOBN01000007
Gammaproteobacteria
Enterobacter cloacae [LOBN]
940419
940344
-
Asp
GTC
[ENA]
¡û
>W1610802155
LORW01000002
Gammaproteobacteria
Klebsiella pneumoniae [LORW]
2319300
2319375
+
Asp
GTC
[ENA]
¡û
>W1710696948
LAWZ01000131
Gammaproteobacteria
Escherichia coli [LAWZ]
10907
10832
-
Asp
GTC
[ENA]
¡û
>W1710696949
LAWZ01000131
Gammaproteobacteria
Escherichia coli [LAWZ]
2901
2826
-
Asp
GTC
[ENA]
¡û
>W1710696970
LAXA01000011
Gammaproteobacteria
Escherichia coli [LAXA]
424
499
+
Asp
GTC
[ENA]
¡û
>W1710697013
LAXA01000031
Gammaproteobacteria
Escherichia coli [LAXA]
456627
456552
-
Asp
GTC
[ENA]
¡û
>W1710697014
LAXA01000031
Gammaproteobacteria
Escherichia coli [LAXA]
448398
448323
-
Asp
GTC
[ENA]
¡û
>W1710697060
LAXB01000015
Gammaproteobacteria
Escherichia coli [LAXB]
92320
92245
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK