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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318054 (52 seq.)
>W1710866374
LMHK01000001
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
746254
746179
-
Val
TAC
[ENA]
¡û
>W1710871900
LMLO01000021
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
827556
827631
+
Val
TAC
[ENA]
¡û
>W1710878240
LMQU01000001
Alphaproteobacteria
Devosia sp. Leaf420 [LMQU]
4426
4351
-
Val
TAC
[ENA]
¡û
>W131111728
APMN01000003
Alphaproteobacteria
Rickettsia prowazekii str. GvF12 [APMN]
26576
26651
+
Val
TAC
[ENA]
¡û
>W131045798
AMRT01000004
Alphaproteobacteria
Rickettsia japonica YH [AMRT]
13449
13374
-
Val
TAC
[ENA]
¡û
>C171035095
CP015012
Alphaproteobacteria
Rickettsia amblyommatis [CP015012]
161419
161344
-
Val
TAC
-
¡û
>C019375
AE017197
Alphaproteobacteria
Rickettsia typhi str. Wilmington [AE017197]
814584
814509
-
Val
TAC
[Ensembl]
¡û
>WENV180057535
MPLX02010250
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
12679
12604
-
Val
TAC
[ENA]
¡û
>WENV180084103
MPMD02148439
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
1039
964
-
Val
TAC
[ENA]
¡û
>W141147972
AWXL01000021
Alphaproteobacteria
Rickettsia gravesii gravesii BWI-1 [AWXL]
22718
22643
-
Val
TAC
[ENA]
¡û
>WENV183796470
PVBE010251958
[PVBE] marine metagenome; water
7059
7134
+
Val
TAC
[ENA]
¡û
>WENV170395208
CEUC01090708
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
535
610
+
Val
TAC
[ENA]
¡û
>WENV170416805
CEUL01146225
[CEUL] marine metagenome genome assembly TARA_124_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
238
163
-
Val
TAC
[ENA]
¡û
>WENV170467824
CEVE01283222
[CEVE] marine metagenome genome assembly TARA_124_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
238
163
-
Val
TAC
[ENA]
¡û
>WENV170519851
CEWE01260853
[CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6238
6163
-
Val
TAC
[ENA]
¡û
>WENV170571922
FLOH01000382
[FLOH] marine metagenome; water
20383
20458
+
Val
TAC
[ENA]
¡û
>WENV170843081
MDSZ01253854
[MDSZ] marine metagenome; seawater
3267
3342
+
Val
TAC
[ENA]
¡û
>WENV170852854
MDTA01158474
[MDTA] marine metagenome; seawater
17821
17746
-
Val
TAC
[ENA]
¡û
>WENV170853334
MDTA01167656
[MDTA] marine metagenome; seawater
1984
2059
+
Val
TAC
[ENA]
¡û
>WENV170876642
MDTC01043856
[MDTC] marine metagenome; seawater
6984
6909
-
Val
TAC
[ENA]
¡û
>WENV170900307
MDTD01152376
[MDTD] marine metagenome; seawater
8990
9065
+
Val
TAC
[ENA]
¡û
>WENV170955823
MJUK01023034
[MJUK] soil metagenome; viral particles from soil sample TG5
133
61
-
Val
TAC
[ENA]
¡û
>WENV170988845
MWVY01013813
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
725
797
+
Val
TAC
[ENA]
¡û
>C191225768
LS992663
Alphaproteobacteria
Rickettsia typhi [LS992663]
814236
814161
-
Val
TAC
-
¡û
>C151094948
CP012420
Alphaproteobacteria
Rickettsia amblyommatis Ac37 [CP012420]
1141082
1141007
-
Val
TAC
-
¡û
>W2011651159
SNYW01000009
Alphaproteobacteria
Dongia mobilis CGMCC 1.7660 [SNYW]
64025
64100
+
Val
TAC
[ENA]
¡û
>W2110427748
JAEMEB010000001
Alphaproteobacteria
Devosia sp. MC521 [JAEMEB]
6641
6566
-
Val
TAC
[ENA]
¡û
>W2110427749
JAEMEB010000001
Alphaproteobacteria
Devosia sp. MC521 [JAEMEB]
6464
6389
-
Val
TAC
[ENA]
¡û
>W2110431651
JAENGO010000001
Alphaproteobacteria
Devosia sp. WQ 349K1 [JAENGO]
393986
393911
-
Val
TAC
[ENA]
¡û
>W2110431652
JAENGO010000001
Alphaproteobacteria
Devosia sp. WQ 349K1 [JAENGO]
393809
393734
-
Val
TAC
[ENA]
¡û
>C231483166
CP104002
Alphaproteobacteria
Devosia sp. SD17-2 [CP104002]
2131455
2131530
+
Val
TAC
-
¡û
>C241180077
CP059902
Alphaproteobacteria
Devosia sp. MC521 [CP059902]
1907563
1907488
-
Val
TAC
-
¡û
>C241180078
CP059902
Alphaproteobacteria
Devosia sp. MC521 [CP059902]
1907386
1907311
-
Val
TAC
-
¡û
>W1511568666
LAJG01000023
Alphaproteobacteria
Devosia soli GH2-10 [LAJG]
109578
109653
+
Val
TAC
[ENA]
¡û
>W1511573993
LANK01000022
Alphaproteobacteria
Devosia subaequoris HST3-14 [LANK]
507473
507548
+
Val
TAC
[ENA]
¡û
>W1511574270
LANR01000001
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Ac/Pa [LANR]
1363576
1363501
-
Val
TAC
[ENA]
¡û
>C121011214
CP003334
Alphaproteobacteria
Rickettsia amblyommatis str. GAT-30V [CP003334]
1132818
1132743
-
Val
TAC
[Ensembl]
¡û
>C121012208
CP003392
Alphaproteobacteria
Rickettsia prowazekii str. Katsinyian [CP003392]
806339
806264
-
Val
TAC
[Ensembl]
¡û
>C121012241
CP003393
Alphaproteobacteria
Rickettsia prowazekii str. BuV67-CWPP [CP003393]
806338
806263
-
Val
TAC
[Ensembl]
¡û
>C121012274
CP003394
Alphaproteobacteria
Rickettsia prowazekii str. Dachau [CP003394]
804480
804405
-
Val
TAC
[Ensembl]
¡û
>C121012314
CP003395
Alphaproteobacteria
Rickettsia prowazekii str. GvV257 [CP003395]
36570
36495
-
Val
TAC
[Ensembl]
¡û
>C121012371
CP003397
Alphaproteobacteria
Rickettsia typhi str. TH1527 [CP003397]
814680
814605
-
Val
TAC
[Ensembl]
¡û
>C121012404
CP003398
Alphaproteobacteria
Rickettsia typhi str. B9991CWPP [CP003398]
815248
815173
-
Val
TAC
[Ensembl]
¡û
>C161078746
CP014865
Alphaproteobacteria
Rickettsia prowazekii Naples-1 [CP014865]
806417
806342
-
Val
TAC
-
¡û
>W121033386
AHIZ01000006
Alphaproteobacteria
Rickettsia sibirica subsp. sibirica BJ-90 [AHIZ]
42590
42515
-
Val
TAC
[ENA]
¡û
>W121044096
AHZB01000018
Alphaproteobacteria
Rickettsia sibirica subsp. mongolitimonae HA-91 [AHZB]
146333
146408
+
Val
TAC
[ENA]
¡û
>C131014579
CP004888
Alphaproteobacteria
Rickettsia prowazekii str. NMRC Madrid E [CP004888]
489139
489214
+
Val
TAC
[Ensembl]
¡û
>C131014618
CP004889
Alphaproteobacteria
Rickettsia prowazekii str. Breinl [CP004889]
1072726
1072801
+
Val
TAC
[Ensembl]
¡û
>W1610728720
LMHK01000001
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
746254
746179
-
Val
TAC
[ENA]
¡û
>W1610734246
LMLO01000021
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
827556
827631
+
Val
TAC
[ENA]
¡û
>W1610740586
LMQU01000001
Alphaproteobacteria
Devosia sp. Leaf420 [LMQU]
4426
4351
-
Val
TAC
[ENA]
¡û
>W1710579488
FPCK01000001
Alphaproteobacteria
Devosia crocina [FPCK]
1745038
1744963
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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