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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31912 (15 seq.)
>W131224812
AUDB01000006
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
93249
93338
+
Ser
GGA
[ENA]
¡û
>W131224813
AUDB01000006
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
93717
93806
+
Ser
GGA
[ENA]
¡û
>WENV180043229
LQAH01012545
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
53
142
+
Ser
GGA
[ENA]
¢þ
>WENV183747519
PPCM01003763
[PPCM] marine sediment metagenome; marine sediment
914
825
-
Ser
GGA
[ENA]
¢þ
>WENV170645368
JMSV01000920
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
3188
3277
+
Ser
GGA
[ENA]
¢þ
>W09118020
ACCN01000009
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
31105
31194
+
Ser
GGA
[ENA]
¡û
>W09118021
ACCN01000009
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
76336
76425
+
Ser
GGA
[ENA]
¡û
>W09118022
ACCN01000009
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
76601
76690
+
Ser
GGA
[ENA]
¡û
>C141011914
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2483972
2484061
+
Ser
GGA
-
¡û
>C141011915
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2484440
2484529
+
Ser
GGA
-
¡û
>C09104262
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2362014
2361925
-
Ser
GGA
[Ensembl]
¡û
>C09104263
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2316783
2316694
-
Ser
GGA
[Ensembl]
¡û
>C09104264
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2316518
2316429
-
Ser
GGA
[Ensembl]
¡û
>C131018096
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2483972
2484061
+
Ser
GGA
[Ensembl]
¡û
>C131018097
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2484440
2484529
+
Ser
GGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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