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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320133 (55 seq.)
>W1711069387
LSFP01000001
Alphaproteobacteria
Zymomonas mobilis [LSFP]
170296
170372
+
Asp
GTC
[ENA]
¡û
>W1711229605
LXYP01000003
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
176
252
+
Asp
GTC
[ENA]
¡û
>C171115159
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
824785
824709
-
Asp
GTC
-
¡û
>W131046796
AMSR01000004
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
66810
66886
+
Asp
GTC
[ENA]
¡û
>C027915
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
444155
444231
+
Asp
GTC
[Ensembl]
¡û
>WENV170647338
JQIA01021422
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
2526
2450
-
Asp
GTC
[ENA]
¡û
>WENV170668058
LADL02000596
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
7171
7095
-
Asp
GTC
[ENA]
¡û
>C181062165
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
1185968
1185892
-
Asp
GTC
-
¡û
>C181068268
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
3560986
3560910
-
Asp
GTC
-
¡û
>C181088851
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
446548
446624
+
Asp
GTC
-
¡û
>C181088902
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
446548
446624
+
Asp
GTC
-
¡û
>C181089229
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
446548
446624
+
Asp
GTC
-
¡û
>C181220323
LT702999
Alphaproteobacteria
Erythrobacter sp. Alg231-14 [LT702999, LT703000]
2743051
2742975
-
Asp
GTC
-
¡û
>C181220342
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
309795
309871
+
Asp
GTC
-
¡û
>C191145576
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
444147
444223
+
Asp
GTC
-
¡û
>C191145627
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
444147
444223
+
Asp
GTC
-
¡û
>C191145678
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
444147
444223
+
Asp
GTC
-
¡û
>W09133943
ACQU01000001
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
179845
179921
+
Asp
GTC
[ENA]
¡û
>W1910182403
BJMW01000003
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
24286
24210
-
Asp
GTC
[ENA]
¡û
>C141008816
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
926343
926267
-
Asp
GTC
[Ensembl]
¡û
>W1911532521
OGVD01000004
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
684758
684834
+
Asp
GTC
[ENA]
¡û
>W1810503361
QBKA01000002
Alphaproteobacteria
Alteripontixanthobacter maritimus HME9302 [QBKA]
909552
909628
+
Asp
GTC
[ENA]
¡û
>C151004618
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
926115
926039
-
Asp
GTC
[Ensembl]
¡û
>C151004669
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
926118
926042
-
Asp
GTC
[Ensembl]
¡û
>W2010096018
BJMW01000003
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
24286
24210
-
Asp
GTC
[ENA]
¡û
>W2010308756
CABWKY010000001
Alphaproteobacteria
Sphingorhabdus sp. 109 [CABWKY]
585877
585953
+
Asp
GTC
[ENA]
¡û
>W2011165280
OGVD01000004
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
684758
684834
+
Asp
GTC
[ENA]
¡û
>W2011231678
PYIA01000035
Alphaproteobacteria
Sphingopyxis sp. BSNA05 [PYIA]
32545
32471
-
Asp
GTC
[ENA]
¡û
>W2011858042
UNRC01000001
Alphaproteobacteria
Sphingorhabdus sp. Alg239-R122 [UNRC]
288159
288083
-
Asp
GTC
[ENA]
¡û
>W2012019564
VFNW01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-23394 [VFNW]
543404
543480
+
Asp
GTC
[ENA]
¡û
>W2012019980
VFOD01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-4492 [VFOD]
529633
529557
-
Asp
GTC
[ENA]
¡û
>W2012020130
VFOG01000001
Alphaproteobacteria
Zymomonas mobilis DSM 14017 [VFOG]
1664774
1664850
+
Asp
GTC
[ENA]
¡û
>W2012020196
VFOH01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12495 [VFOH]
991720
991644
-
Asp
GTC
[ENA]
¡û
>W2012020249
VFOI01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12494 [VFOI]
351636
351560
-
Asp
GTC
[ENA]
¡û
>W2012031295
VHJK01000002
Alphaproteobacteria
Erythrobacter sp. JBTF-M21 [VHJK]
184875
184799
-
Asp
GTC
[ENA]
¡û
>W2012046596
VIVF01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12497 [VIVF]
83716
83640
-
Asp
GTC
[ENA]
¡û
>W2012046634
VIVG01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-4286 [VIVG]
871327
871251
-
Asp
GTC
[ENA]
¡û
>W2012047435
VIVT01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-14022 [VIVT]
392855
392931
+
Asp
GTC
[ENA]
¡û
>W2012438727
WTYE01000001
Alphaproteobacteria
Erythrobacter jejuensis JCM 16677 [WTYE]
2113270
2113346
+
Asp
GTC
[ENA]
¡û
>W2012439067
WTYL01000001
Alphaproteobacteria
Altererythrobacter sediminis KCTC 42453 [WTYL]
977010
976934
-
Asp
GTC
[ENA]
¡û
>W2012439412
WTYS01000001
Alphaproteobacteria
Altererythrobacter gangjinensis JCM 17802 [WTYS]
2040820
2040744
-
Asp
GTC
[ENA]
¡û
>W2110570451
JAGSPB010000003
Alphaproteobacteria
Erythrobacter sp. WH131 [JAGSPB]
207482
207406
-
Asp
GTC
[ENA]
¡û
>W2110570467
JAGSPC010000001
Alphaproteobacteria
Erythrobacter sp. WH158 [JAGSPC]
1949148
1949224
+
Asp
GTC
[ENA]
¡û
>C211295907
CP071794
Alphaproteobacteria
Parasphingorhabdus sp. JHSY0214 [CP071794]
9882
9958
+
Asp
GTC
-
¡û
>C211367550
CP079220
Alphaproteobacteria
Zymomonas mobilis ZM401 [CP079220]
1550944
1550868
-
Asp
GTC
-
¡û
>C211405865
CP083898
Alphaproteobacteria
Zymomonas mobilis ZM481 [CP083898]
599033
599109
+
Asp
GTC
-
¡û
>C231232423
CP086727
Alphaproteobacteria
Parasphingorhabdus litoris DSM 22379 [CP086727]
2124125
2124049
-
Asp
GTC
-
¡û
>C241149592
CP051217
Alphaproteobacteria
Parasphingorhabdus halotolerans JK6 [CP051217]
200586
200662
+
Asp
GTC
-
¡û
>C10114602
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
924614
924538
-
Asp
GTC
[Ensembl]
¡û
>C121003139
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1148693
1148769
+
Asp
GTC
[Ensembl]
¡û
>C121015276
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
925912
925836
-
Asp
GTC
[Ensembl]
¡û
>C161073953
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
1260994
1261070
+
Asp
GTC
[Ensembl]
¡û
>W1610909915
LSFP01000001
Alphaproteobacteria
Zymomonas mobilis [LSFP]
170296
170372
+
Asp
GTC
[ENA]
¡û
>W1611013475
LXYP01000003
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
176
252
+
Asp
GTC
[ENA]
¡û
>W1710593922
FSQW01000002
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
749169
749093
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK