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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320203 (27 seq.)
>W1710885806
LMXL01000096
Gammaproteobacteria
Escherichia coli O157:H7 [LMXL]
126008
126083
+
Asp
GTC
[ENA]
¡û
>W1710923345
LOBN01000007
Gammaproteobacteria
Enterobacter cloacae [LOBN]
949850
949775
-
Asp
GTC
[ENA]
¡û
>W1710923346
LOBN01000007
Gammaproteobacteria
Enterobacter cloacae [LOBN]
940419
940344
-
Asp
GTC
[ENA]
¡û
>W1710946212
LORW01000002
Gammaproteobacteria
Klebsiella pneumoniae [LORW]
2319300
2319375
+
Asp
GTC
[ENA]
¡û
>C171032803
CP014670
Gammaproteobacteria
Escherichia coli CFSAN004177 [CP014670]
3388662
3388737
+
Asp
GTC
-
¡û
>C181005105
AP018340
Gammaproteobacteria
Enterobacter cloacae subsp. cloacae 2016_smu953 [AP018340]
184292
184367
+
Asp
GTC
-
¡û
>C181005140
AP018340
Gammaproteobacteria
Enterobacter cloacae subsp. cloacae 2016_smu953 [AP018340]
3987671
3987596
-
Asp
GTC
-
¡û
>C181005141
AP018340
Gammaproteobacteria
Enterobacter cloacae subsp. cloacae 2016_smu953 [AP018340]
3978322
3978247
-
Asp
GTC
-
¡û
>C181142115
CP026825
Gammaproteobacteria
Shigella dysenteriae ATCC 9751 [CP026825]
1781410
1781485
+
Asp
GTC
-
¡û
>C181145406
CP027104
Gammaproteobacteria
Escherichia coli RM14715 [CP027104]
981464
981539
+
Asp
GTC
-
¡û
>C181202749
CP031609
Gammaproteobacteria
Escherichia coli N3 [CP031609]
4765055
4764980
-
Asp
GTC
-
¡û
>C191186136
CP041054
Gammaproteobacteria
Enterobacter hormaechei C126 [CP041054]
3162698
3162773
+
Asp
GTC
-
¡û
>C191186174
CP041054
Gammaproteobacteria
Enterobacter hormaechei C126 [CP041054]
2034514
2034439
-
Asp
GTC
-
¡û
>C191186175
CP041054
Gammaproteobacteria
Enterobacter hormaechei C126 [CP041054]
2025147
2025072
-
Asp
GTC
-
¡û
>W1911209866
NRLL01000015
Gammaproteobacteria
Cronobacter sakazakii 494G [NRLL]
89467
89392
-
Asp
GTC
[ENA]
¡û
>W1911209876
NRLL01000026
Gammaproteobacteria
Cronobacter sakazakii 494G [NRLL]
48096
48021
-
Asp
GTC
[ENA]
¡û
>W1911210156
NRLP01000048
Gammaproteobacteria
Cronobacter sakazakii 487G [NRLP]
8532
8607
+
Asp
GTC
[ENA]
¡û
>W1911430623
NXKW01000676
Gammaproteobacteria
Klebsiella pneumoniae ST-234:K054 [NXKW]
424
349
-
Asp
GTC
[ENA]
¡û
>W1911430641
NXKW01001006
Gammaproteobacteria
Klebsiella pneumoniae ST-234:K054 [NXKW]
206
131
-
Asp
GTC
[ENA]
¡û
>W1810329801
PUIF01000171
Gammaproteobacteria
Klebsiella pneumoniae BA1790 [PUIF]
9468
9543
+
Asp
GTC
[ENA]
¡û
>SRA1004868
SRR006906.166289
metagenomic water samples (SRP000427)
197
122
-
Asp
GTC
[SRA]
>W11138303
AEIA01000030
Gammaproteobacteria
Escherichia fergusonii B253 [AEIA]
78
3
-
Asp
GTC
[ENA]
¡û
>C161027925
CP010512
Gammaproteobacteria
Enterobacter cloacae colR/S [CP010512]
5901
5826
-
Asp
GTC
-
¡û
>W1610747732
LMXL01000096
Gammaproteobacteria
Escherichia coli O157:H7 [LMXL]
126008
126083
+
Asp
GTC
[ENA]
¡û
>W1610780824
LOBN01000007
Gammaproteobacteria
Enterobacter cloacae [LOBN]
949850
949775
-
Asp
GTC
[ENA]
¡û
>W1610780825
LOBN01000007
Gammaproteobacteria
Enterobacter cloacae [LOBN]
940419
940344
-
Asp
GTC
[ENA]
¡û
>W1610802155
LORW01000002
Gammaproteobacteria
Klebsiella pneumoniae [LORW]
2319300
2319375
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK