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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320612 (67 seq.)
>W1711456002
MJAK01000004
Actinomycetota
Curtobacterium sp. ER1/6 [MJAK]
299199
299274
+
Lys
CTT
[ENA]
¡û
>WENV180016041
FSTY01000290
[FSTY] metagenome; soil
3214
3139
-
Lys
CTT
[ENA]
¡û
>WENV180650215
OCSY01000164
[OCSY] marine metagenome; 30 L Plastic container
400
325
-
Lys
CTT
[ENA]
¡û
>WENV181322149
OFKP01011537
[OFKP] marine metagenome; sea ice
454
529
+
Lys
CTT
[ENA]
¡û
>WENV181323602
OFKY01014856
[OFKY] marine metagenome; sea ice
178
103
-
Lys
CTT
[ENA]
¡û
>WENV181324132
OFLC01000312
[OFLC] marine metagenome; melt pond
304
229
-
Lys
CTT
[ENA]
¡û
>WENV181324364
OFLE01001149
[OFLE] marine metagenome; sea ice
1017
942
-
Lys
CTT
[ENA]
¡û
>WENV181324501
OFLF01000100
[OFLF] marine metagenome; melt pond
5521
5446
-
Asn
ATT
[ENA]
¡û
>WENV181324727
OFLH01000945
[OFLH] marine metagenome; sea ice
479
554
+
Lys
CTT
[ENA]
¡û
>WENV181325014
OFLI01001534
[OFLI] seawater metagenome; seawater
1288
1363
+
Lys
CTT
[ENA]
¡û
>WENV181325931
OFLJ01049590
[OFLJ] seawater metagenome; seawater
349
424
+
Lys
CTT
[ENA]
¡û
>WENV181393205
OFRX01071747
[OFRX] seawater metagenome; seawater
9
84
+
Lys
CTT
[ENA]
¡û
>W141223157
BACZ01000551
Actinomycetota
Curtobacterium sp. B18 [BACZ]
612
687
+
Lys
CTT
[ENA]
¡û
>WENV183615157
OOEA01083416
[OOEA] marine metagenome; sea ice
234
159
-
Lys
CTT
[ENA]
¡û
>WENV183618459
OOFO01001513
[OOFO] marine metagenome; seawater
1288
1363
+
Lys
CTT
[ENA]
¡û
>WENV183619800
OOFQ01051340
[OOFQ] marine metagenome; seawater
349
424
+
Lys
CTT
[ENA]
¡û
>WENV183620884
OOFT01000004
[OOFT] marine metagenome; sea ice
9037
9112
+
Lys
CTT
[ENA]
¡û
>WENV183621718
OOFU01038528
[OOFU] marine metagenome; sea ice
193
268
+
Lys
CTT
[ENA]
¡û
>WENV183624447
OOGD01011040
[OOGD] marine metagenome; sea ice
414
339
-
Lys
CTT
[ENA]
¡û
>WENV183628776
OOGO01022798
[OOGO] marine metagenome; sea ice
452
377
-
Lys
CTT
[ENA]
¡û
>WENV183629582
OOGP01074567
[OOGP] marine metagenome; seawater
9
84
+
Lys
CTT
[ENA]
¡û
>WENV170567809
FLMP01006077
[FLMP] seawater metagenome; seawater
731
656
-
Lys
CTT
[ENA]
¡û
>WENV170569691
FLMP01271050
[FLMP] seawater metagenome; seawater
9
84
+
Lys
CTT
[ENA]
¡û
>WENV170598598
FUWD010041014
[FUWD] metagenome; unknown
532
607
+
Lys
CTT
[ENA]
¡û
>WENV170607932
FUWD010872626
[FUWD] metagenome; unknown
305
380
+
Lys
CTT
[ENA]
¡û
>WENV170619707
FUWD013019499
[FUWD] metagenome; unknown
1184
1109
-
Lys
CTT
[ENA]
¡û
>WENV170624089
FUWD013174942
[FUWD] metagenome; unknown
573
648
+
Lys
CTT
[ENA]
¡û
>WENV170627302
FUWD013232518
[FUWD] metagenome; unknown
22824
22749
-
Lys
CTT
[ENA]
¡û
>WENV170627828
FUWD013237879
[FUWD] metagenome; unknown
1184
1109
-
Lys
CTT
[ENA]
¡û
>WENV170632374
FUWD013381206
[FUWD] metagenome; unknown
573
648
+
Lys
CTT
[ENA]
¡û
>WENV170948344
MEHZ011153558
[MEHZ] marine metagenome; marine surface water
704
779
+
Lys
CTT
[ENA]
¡û
>C191055999
CP027869
Actinomycetota
Curtobacterium sp. SGAir0471 [CP027869]
2219562
2219489
-
Lys
CTT
-
¡û
>W1911496208
OCMI01000002
Actinomycetota
Curtobacterium sp. 314Chir4.1 [OCMI]
40008
39933
-
Lys
CTT
[ENA]
¡û
>W1810680969
QKSM01000021
Actinomycetota
Curtobacterium sp. MCSS17_008 [QKSM]
8630
8704
+
Lys
CTT
[ENA]
¡û
>W1810680995
QKSN01000003
Actinomycetota
Curtobacterium sp. MCSS17_007 [QKSN]
24251
24177
-
Lys
CTT
[ENA]
¡û
>W1810762699
QQAO01000003
Actinomycetota
Curtobacterium sp. AG1037 [QQAO]
6822
6747
-
Lys
CTT
[ENA]
¡û
>SRA1024640
SRR035084.366595
454 Sequencing (SRP001805)
31
106
+
Lys
CTT
[SRA]
>SRA1024838
SRR035084.416172
454 Sequencing (SRP001805)
136
60
-
Lys
CTT
[SRA]
>SRA1024932
SRR035084.438119
454 Sequencing (SRP001805)
22
97
+
Lys
CTT
[SRA]
>W2010607198
JABMCG010000071
Actinomycetota
Curtobacterium albidum DSM 20512 [JABMCG]
24509
24434
-
Lys
CTT
[ENA]
¡û
>W2011157112
OCMI01000002
Actinomycetota
Curtobacterium sp. 314Chir4.1 [OCMI]
40008
39933
-
Lys
CTT
[ENA]
¡û
>W2011376322
RBLU01000138
Actinomycetota
Curtobacterium sp. HSID17257 [RBLU]
3769
3844
+
Lys
CTT
[ENA]
¡û
>SRA1046794
SRR035093.387516
454 Sequencing (SRP001814)
186
261
+
Lys
CTT
[SRA]
>SRA1047319
SRR035093.509546
454 Sequencing (SRP001814)
169
94
-
Lys
CTT
[SRA]
>W2011991422
VDTL01000007
Actinomycetota
Curtobacterium sp. BH-2-1-1 DE0401 [VDTL]
38795
38870
+
Lys
CTT
[ENA]
¡û
>W2012017742
VFMQ01000001
Actinomycetota
Curtobacterium citreum DSM 20528 [VFMQ]
2510196
2510121
-
Lys
CTT
[ENA]
¡û
>SRA1053364
SRR035098.391951
454 Sequencing (SRP001819)
177
102
-
Lys
CTT
[SRA]
>W2110033452
BMNV01000001
Actinomycetota
Curtobacterium citreum JCM 1345 [BMNV]
24226
24151
-
Lys
CTT
[ENA]
¡û
>W2110094984
CAJCKG010000062
Actinomycetota
Curtobacterium sp. ME26 [CAJCKG]
6568
6493
-
Lys
CTT
[ENA]
¡û
>W2110178489
JABGBS010000018
Actinomycetota
Brevibacterium casei NAB46 [JABGBS]
22412
22337
-
Lys
CTT
[ENA]
¡û
>W2110271958
JACVMV010000002
Actinomycetota
Leucobacter sp. cx-87 [JACVMV]
150
223
+
Lys
CTT
[ENA]
¡û
>W2110271987
JACVMW010000002
Actinomycetota
Leucobacter sp. cx-169 [JACVMW]
143
216
+
Lys
CTT
[ENA]
¡û
>W2110500448
JAFICY010000004
Actinomycetota
Curtobacterium sp. 1310 [JAFICY]
392782
392856
+
Lys
CTT
[ENA]
¡û
>W2110503957
JAFIRI010000002
Actinomycetota
Leucobacter sp. CX87 [JAFIRI]
150
223
+
Lys
CTT
[ENA]
¡û
>C211283632
CP071051
Actinomycetota
Leucobacter sp. CX169 [CP071051]
1854494
1854567
+
Lys
CTT
-
¡û
>C211405945
CP083910
Actinomycetota
Curtobacterium sp. TXMA1 [CP083910]
2132647
2132572
-
Lys
CTT
-
¡û
>C231249118
CP088076
Actinomycetota
Curtobacterium sp. C1 [CP088076]
2182640
2182565
-
Lys
CTT
-
¡û
>C231641095
CP121450
Actinomycetota
Curtobacterium flaccumfaciens Sample7_18 [CP121450]
3039559
3039484
-
Lys
CTT
-
¡û
>C161021927
CP009755
Actinomycetota
Curtobacterium sp. MR_MD2014 [CP009755]
2188092
2188017
-
Lys
CTT
[Ensembl]
¡û
>W121063461
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
387154
387229
+
Lys
CTT
[ENA]
¡û
>W1610588240
LDQB01000131
Actinomycetota
Curtobacterium citreum [LDQB]
24275
24200
-
Lys
CTT
[ENA]
¡û
>W1610590011
LDRB01000099
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
6985
6910
-
Lys
CTT
[ENA]
¡û
>W1610590040
LDRC01000053
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
8035
8110
+
Lys
CTT
[ENA]
¡û
>W1610625728
LIBA01000108
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
729
804
+
Lys
CTT
[ENA]
¡û
>W1710707520
LDQB01000131
Actinomycetota
Curtobacterium citreum [LDQB]
24275
24200
-
Lys
CTT
[ENA]
¡û
>W1710709291
LDRB01000099
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
6985
6910
-
Lys
CTT
[ENA]
¡û
>W1710756855
LIBA01000108
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
729
804
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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