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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
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Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323311 (120 seq.)
>W1710811735
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1285544
1285619
+
Ala
CGC
[ENA]
¡û
>W1710865793
LMGY01000016
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
355035
355110
+
Ala
CGC
[ENA]
¡û
>W1710872145
LMLT01000006
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
520867
520942
+
Ala
CGC
[ENA]
¡û
>W1711386248
MEFB01000063
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
4633
4558
-
Ala
CGC
[ENA]
¡û
>W1711386252
MEFB01000099
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
4621
4546
-
Ala
CGC
[ENA]
¡û
>W1711506444
MKWK01000004
Gammaproteobacteria
Stenotrophomonas sp. 69-14 [MKWK]
436255
436180
-
Ala
CGC
[ENA]
¡û
>W1711711527
MTAY01000087
Gammaproteobacteria
Lysobacter enzymogenes [MTAY]
3133
3058
-
Ala
CGC
[ENA]
¡û
>W131231923
AUIV01000014
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
40948
40873
-
Ala
CGC
[ENA]
¡û
>WENV180035893
FTLB01040291
[FTLB] metagenome; soil
384
309
-
Ala
CGC
[ENA]
¡û
>WENV180298030
OBJA01143706
[OBJA] soil metagenome; sediment, water from around vicinity
129
54
-
Ala
CGC
[ENA]
¡û
>W141149605
AWZR01000003
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
112103
112178
+
Ala
CGC
[ENA]
¡û
>WENV181731991
OGQD01007304
[OGQD] human gut metagenome; faeces
328
403
+
Ala
CGC
[ENA]
¡û
>W141215590
AZUH01000002
Gammaproteobacteria
Pseudoxanthomonas suwonensis J42 [AZUH]
243119
243194
+
Ala
CGC
[ENA]
¡û
>W141216670
AZVB01000007
Gammaproteobacteria
Pseudoxanthomonas sp. J35 [AZVB]
56195
56120
-
Ala
CGC
[ENA]
¡û
>W141277585
JAES01000010
Gammaproteobacteria
Pseudoxanthomonas suwonensis J43 [JAES]
60214
60289
+
Ala
CGC
[ENA]
¡û
>WENV182944156
OKVI01005789
[OKVI] human gut metagenome; human gut
2274
2199
-
Ala
CGC
[ENA]
¡û
>WENV182947603
OKVM01004790
[OKVM] human gut metagenome; human gut
661
586
-
Ala
CGC
[ENA]
¡û
>WENV183732389
PJTX01000091
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
11250
11325
+
Ala
CGC
[ENA]
¡û
>WENV183733321
PJTY01001022
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
8473
8398
-
Ala
CGC
[ENA]
¡û
>WENV183734080
PJTZ01000041
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
55734
55659
-
Ala
CGC
[ENA]
¡û
>WENV183734808
PJUA01000024
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
107457
107532
+
Ala
CGC
[ENA]
¡û
>WENV183735510
PJUB01000025
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
107414
107489
+
Ala
CGC
[ENA]
¡û
>WENV183736084
PJUC01000021
[PJUC] soil metagenome; Soil enriched on filter paper
122914
122989
+
Ala
CGC
[ENA]
¡û
>WENV183740487
PJUF01002637
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4629
4704
+
Ala
CGC
[ENA]
¡û
>WENV183741513
PJUG01000036
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
124739
124814
+
Ala
CGC
[ENA]
¡û
>WENV183742006
PJUH01000039
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
55933
55858
-
Ala
CGC
[ENA]
¡û
>WENV183742816
PJUI01000350
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
5171
5246
+
Ala
CGC
[ENA]
¡û
>WENV183743164
PJUJ01000070
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
55933
55858
-
Ala
CGC
[ENA]
¡û
>WENV183743911
PJUK01000039
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
124739
124814
+
Ala
CGC
[ENA]
¡û
>WENV170000202
AERA01024097
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
429
504
+
Ala
CGC
[ENA]
¡û
>WENV170574249
FLYM01017697
[FLYM] hot springs metagenome; Sediment
1581
1506
-
Ala
CGC
[ENA]
¡û
>WENV170721797
LSQX01203792
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11608
11533
-
Ala
CGC
[ENA]
¡û
>C181180375
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
1155133
1155208
+
Ala
CGC
-
¡û
>C191165677
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
1796437
1796512
+
Ala
CGC
-
¡û
>W1910896591
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
2017687
2017612
-
Ala
CGC
[ENA]
¡û
>W1911405219
NWQL01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
910499
910424
-
Ala
CGC
[ENA]
¡û
>W1810628318
QICJ01000001
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
166691
166766
+
Ala
CGC
[ENA]
¡û
>W1810692814
QLKV01000014
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
16602
16527
-
Ala
CGC
[ENA]
¡û
>W2010174549
CABGAS010000135
Gammaproteobacteria
Stenotrophomonas maltophilia [CABGAS]
23184
23259
+
Ala
CGC
[ENA]
¡û
>W2010174613
CABGAS010000392
Gammaproteobacteria
Stenotrophomonas maltophilia [CABGAS]
23184
23259
+
Ala
CGC
[ENA]
¡û
>W2010274955
CABKVU020000006
Gammaproteobacteria
Xanthomonas massiliensis [CABKVU]
1483152
1483227
+
Ala
CGC
[ENA]
¡û
>W2010449326
JAACYG010000025
Gammaproteobacteria
Stenotrophomonas acidaminiphila APG1 [JAACYG]
23075
23000
-
Ala
CGC
[ENA]
¡û
>W2010701675
JACHGU010000003
Gammaproteobacteria
Pseudoxanthomonas broegbernensis DSM 12573 [JACHGU]
114492
114567
+
Ala
CGC
[ENA]
¡û
>W2010910299
MSZW01000004
Gammaproteobacteria
Thermomonas haemolytica LMG 19653 [MSZW]
24964
25039
+
Ala
CGC
[ENA]
¡û
>W2010918251
MWIP01000001
Gammaproteobacteria
Pseudoxanthomonas broegbernensis DSM 12573 [MWIP]
117323
117398
+
Ala
CGC
[ENA]
¡û
>W2010957085
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
2017687
2017612
-
Ala
CGC
[ENA]
¡û
>W2011135212
NWQL01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
910499
910424
-
Ala
CGC
[ENA]
¡û
>W2011187391
PDWL01000008
Gammaproteobacteria
Pseudoxanthomonas jiangsuensis DSM 22398 [PDWL]
16328
16253
-
Ala
CGC
[ENA]
¡û
>W2011187493
PDWN01000013
Gammaproteobacteria
Pseudoxanthomonas daejeonensis DSM 17801 [PDWN]
108580
108655
+
Ala
CGC
[ENA]
¡û
>W2011187620
PDWQ01000003
Gammaproteobacteria
Pseudoxanthomonas kalamensis DSM 18571 [PDWQ]
139647
139572
-
Ala
CGC
[ENA]
¡û
>W2011403261
RCTY01000044
Gammaproteobacteria
Lysobacter enzymogenes OH11 [RCTY]
194092
194167
+
Ala
CGC
[ENA]
¡û
>W2011486171
RRYL01000009
Gammaproteobacteria
Pseudoxanthomonas sp. SGD-10 [RRYL]
63063
62988
-
Ala
CGC
[ENA]
¡û
>W2011529184
SAYT01000002
Gammaproteobacteria
Dyella sp. DHC06 [SAYT]
358181
358256
+
Ala
CGC
[ENA]
¡û
>W2011578707
SGXN01000002
Gammaproteobacteria
Stenotrophomonas sp. BK441 [SGXN]
154841
154916
+
Ala
CGC
[ENA]
¡û
>W2011580970
SHLZ01000003
Gammaproteobacteria
Pseudoxanthomonas sp. NML180594 [SHLZ]
537915
537840
-
Ala
CGC
[ENA]
¡û
>W2011581070
SHMB01000003
Gammaproteobacteria
Pseudoxanthomonas sp. NML171202 [SHMB]
244074
243999
-
Ala
CGC
[ENA]
¡û
>W2011581134
SHMC01000005
Gammaproteobacteria
Pseudoxanthomonas sp. NML171200 [SHMC]
177620
177695
+
Ala
CGC
[ENA]
¡û
>W2011581203
SHMD01000007
Gammaproteobacteria
Pseudoxanthomonas sp. NML171107 [SHMD]
34749
34824
+
Ala
CGC
[ENA]
¡û
>W2011581985
SHNM01000003
Gammaproteobacteria
Pseudoxanthomonas sp. NML160639 [SHNM]
18412
18487
+
Ala
CGC
[ENA]
¡û
>W2011603738
SJCW01000002
Gammaproteobacteria
Pseudoxanthomonas sp. NML171590 [SJCW]
50512
50437
-
Ala
CGC
[ENA]
¡û
>W2011617257
SKFB01000039
Gammaproteobacteria
Lysobacter sp. N42 [SKFB]
15124
15049
-
Ala
CGC
[ENA]
¡û
>W2011627692
SMAP01000012
Gammaproteobacteria
Thermomonas haemolytica DSM 13605 [SMAP]
16642
16567
-
Ala
CGC
[ENA]
¡û
>W2011640402
SMTF01000004
Gammaproteobacteria
Luteimonas aestuarii B9 [SMTF]
25905
25980
+
Ala
CGC
[ENA]
¡û
>W2011640430
SMTG01000002
Gammaproteobacteria
Luteimonas terrae THG-MD21 [SMTG]
832867
832942
+
Ala
CGC
[ENA]
¡û
>W2011675858
SPUH01000001
Gammaproteobacteria
Luteimonas sp. 1626 [SPUH]
1036513
1036588
+
Ala
CGC
[ENA]
¡û
>W2011679778
SROY01000002
Gammaproteobacteria
Thermomonas fusca SHC 3-19 [SROY]
426822
426897
+
Ala
CGC
[ENA]
¡û
>W2011687194
SRYW01000002
Gammaproteobacteria
Stenotrophomonas maltophilia NM62_B4-13 [SRYW]
88168
88093
-
Ala
CGC
[ENA]
¡û
>W2012021196
VFPB01000004
Gammaproteobacteria
Pseudoxanthomonas sp. 3HH-4 [VFPB]
121092
121017
-
Ala
CGC
[ENA]
¡û
>W2012080278
VLJO01000078
Gammaproteobacteria
Luteimonas sp. J16 [VLJO]
92300
92225
-
Ala
CGC
[ENA]
¡û
>W2012081659
VLKP01000004
Gammaproteobacteria
Lysobacter ruishenii CGMCC 1.10136 [VLKP]
40441
40366
-
Ala
CGC
[ENA]
¡û
>W2012103011
VOHE01000001
Gammaproteobacteria
Luteimonas sp. YD-1 [VOHE]
98584
98659
+
Ala
CGC
[ENA]
¡û
>W2012103111
VOHK01000001
Gammaproteobacteria
Luteimonas marina FR1330 [VOHK]
294261
294186
-
Ala
CGC
[ENA]
¡û
>W2012139412
VTFT01000001
Gammaproteobacteria
Luteimonas sp. XBU10 [VTFT]
302196
302271
+
Ala
CGC
[ENA]
¡û
>W2012332279
WIAY01000005
Gammaproteobacteria
Stenotrophomonas sp. W5 [WIAY]
60446
60521
+
Ala
CGC
[ENA]
¡û
>W2012332669
WIDL01000013
Gammaproteobacteria
Stenotrophomonas sp. MYb238 [WIDL]
56814
56889
+
Ala
CGC
[ENA]
¡û
>W2110011761
BCPR01000017
Gammaproteobacteria
Dyella sp. EPa41 [BCPR]
54999
54924
-
Ala
CGC
[ENA]
¡û
>W2110068474
BOUK01000003
Gammaproteobacteria
Pseudoxanthomonas japonensis TUM 20250 [BOUK]
109269
109344
+
Ala
CGC
[ENA]
¡û
>W2110260419
JACSQJ010000001
Gammaproteobacteria
Luteimonas sp. Sa2BVA3 [JACSQJ]
680283
680358
+
Ala
CGC
[ENA]
¡û
>W2110267479
JACVAK010000001
Gammaproteobacteria
Pseudoxanthomonas sp. PXM02 [JACVAK]
480793
480868
+
Ala
CGC
[ENA]
¡û
>W2110267704
JACVAP010000001
Gammaproteobacteria
Xanthomonas sp. XNM01 [JACVAP]
1172776
1172701
-
Ala
CGC
[ENA]
¡û
>W2110292825
JACYXK010000020
Gammaproteobacteria
Rhodanobacter sp. DHB23 [JACYXK]
120025
120100
+
Ala
CGC
[ENA]
¡û
>W2110292882
JACYXL010000001
Gammaproteobacteria
Rhodanobacter sp. 7MK24 [JACYXL]
651555
651480
-
Ala
CGC
[ENA]
¡û
>W2110425289
JAELTQ010000012
Gammaproteobacteria
Dyella sp. ASV24 [JAELTQ]
49587
49512
-
Ala
CGC
[ENA]
¡û
>W2110454137
JAETWA010000045
Gammaproteobacteria
Luteimonas sp. SJ-9 [JAETWA]
267828
267753
-
Ala
CGC
[ENA]
¡û
>W2110546271
JAGGRK010000010
Gammaproteobacteria
Lysobacter sp. ISL-54 [JAGGRK]
61308
61383
+
Ala
CGC
[ENA]
¡û
>W2110561112
JAGKTC010000002
Gammaproteobacteria
Pseudoxanthomonas helianthi 110414 [JAGKTC]
745664
745739
+
Ala
CGC
[ENA]
¡û
>W2110692742
JAIQDJ010000005
Gammaproteobacteria
Thermomonas sp. RSS23 [JAIQDJ]
113941
113866
-
Ala
CGC
[ENA]
¡û
>C211137360
CP060711
Gammaproteobacteria
Thermomonas brevis KACC 16975 [CP060711]
524933
525008
+
Ala
CGC
-
¡û
>C211238738
CP067395
Gammaproteobacteria
Lysobacter enzymogenes CX03 [CP067395]
71702
71627
-
Ala
CGC
-
¡û
>C211310408
CP072597
Gammaproteobacteria
Lysobacter sp. K5869 [CP072597]
4885593
4885668
+
Ala
CGC
-
¡û
>C231113159
CP067396
Gammaproteobacteria
Lysobacter enzymogenes CX06 [CP067396]
3966269
3966344
+
Ala
CGC
-
¡û
>C231261983
CP089414
Gammaproteobacteria
Dyella terrae Ely Copper Mine [CP089414]
1074459
1074534
+
Ala
CGC
-
¡û
>C231331317
CP093311
Gammaproteobacteria
Thermomonas sp. IMCC34681 [CP093311]
1898671
1898746
+
Ala
CGC
-
¡û
>C231331815
CP093331
Gammaproteobacteria
Pseudoxanthomonas daejeonensis S9-A64R [CP093331]
3409561
3409636
+
Ala
CGC
-
¡û
>C231358558
CP095184
Gammaproteobacteria
Pseudoxanthomonas mexicana F12 [CP095184]
3358937
3358862
-
Ala
CGC
-
¡û
>C231362902
CP095741
Gammaproteobacteria
Luteibacter sp. 335 [CP095741]
2186844
2186769
-
Ala
CGC
-
¡û
>C231537670
CP110813
Gammaproteobacteria
Lysobacter enzymogenes B25 [CP110813]
4277938
4278013
+
Ala
CGC
-
¡û
>C231572183
CP116007
Gammaproteobacteria
Pseudoxanthomonas mexicana DMF-5 [CP116007]
3750793
3750868
+
Ala
CGC
-
¡û
>C241257855
CP125110
Gammaproteobacteria
Stenotrophomonas acidaminiphila SPDF1 [CP125110]
1691565
1691490
-
Ala
CGC
-
¡û
>W2130043188
LXSD01000667
Gammaproteobacteria
Lysobacter enzymogenes 521 [LXSD]
11426
11351
-
Ala
CGC
[ENA]
¡û
>W1511547588
JZRB01000026
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
24008
24083
+
Ala
CGC
[ENA]
¡û
>W11172543
AFSN01000011
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [AFSN]
404192
404117
-
Ala
CGC
[ENA]
¡û
>C121005599
CP003093
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [CP003093]
1889079
1889004
-
Ala
CGC
[Ensembl]
¡û
>C161047169
CP012900
Gammaproteobacteria
Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2 [CP012900]
1738533
1738458
-
Ala
CGC
[Ensembl]
¡û
>C161052066
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
1926070
1925995
-
Ala
CGC
[Ensembl]
¡û
>W1610027347
AVPU01000009
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
77121
77196
+
Ala
CGC
[ENA]
¡û
>W121113888
ALOY01000159
Gammaproteobacteria
Dyella japonica A8 [ALOY]
36405
36330
-
Ala
CGC
[ENA]
¡û
>W1610207398
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
1483152
1483227
+
Ala
CGC
[ENA]
¡û
>W1610587323
LDJP01000077
Gammaproteobacteria
Stenotrophomonas daejeonensis [LDJP]
12380
12305
-
Ala
CGC
[ENA]
¡û
>W1610675832
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1285544
1285619
+
Ala
CGC
[ENA]
¡û
>W1610728139
LMGY01000016
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
355035
355110
+
Ala
CGC
[ENA]
¡û
>W1610734491
LMLT01000006
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
520867
520942
+
Ala
CGC
[ENA]
¡û
>WENV080234
AATO01014986
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
226
301
+
Ala
CGC
[ENA]
>W1710023581
AVPU01000009
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
77121
77196
+
Ala
CGC
[ENA]
¡û
>W1710208032
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
1483152
1483227
+
Ala
CGC
[ENA]
¡û
>W1710527397
FNKZ01000001
Gammaproteobacteria
Pseudoxanthomonas sp. CF385 [FNKZ]
1791575
1791500
-
Ala
CGC
[ENA]
¡û
>W1710531732
FNPT01000010
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
154389
154464
+
Ala
CGC
[ENA]
¡û
>W1710579385
FPCI01000001
Gammaproteobacteria
Pseudoxanthomonas sp. YR558 [FPCI]
700207
700282
+
Ala
CGC
[ENA]
¡û
>W1710582996
FQUK01000037
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
8039
7964
-
Ala
CGC
[ENA]
¡û
>W1710706453
LDJP01000077
Gammaproteobacteria
Stenotrophomonas daejeonensis [LDJP]
12380
12305
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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