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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.325916 (77 seq.)
>W1712040433
NFKI01000120
Bacillota
Pseudoflavonifractor sp. An184 [NFKI]
2054
2129
+
Ala
TGC
[ENA]
¡û
>W1712040437
NFKI01000161
Bacillota
Pseudoflavonifractor sp. An184 [NFKI]
294
369
+
Ala
TGC
[ENA]
¡û
>WENV180469872
OBYM01021536
[OBYM] human gut metagenome; faeces
708
633
-
Ala
TGC
[ENA]
¡û
>WENV180543016
OCHT01047499
[OCHT] human gut metagenome; human gut
122
47
-
Ala
TGC
[ENA]
¡û
>WENV180563390
OCLC01023246
[OCLC] human gut metagenome; human gut
212
287
+
Ala
TGC
[ENA]
¡û
>WENV180575789
OCLY01010295
[OCLY] human gut metagenome; human gut
554
479
-
Ala
TGC
[ENA]
¡û
>WENV180577592
OCMA01113938
[OCMA] human gut metagenome; human gut
120
195
+
Ala
TGC
[ENA]
¡û
>WENV180613382
OCPX01071587
[OCPX] human gut metagenome; human gut
215
290
+
Ala
TGC
[ENA]
¡û
>WENV180626052
OCQL01134428
[OCQL] human gut metagenome; human gut
125
50
-
Ala
TGC
[ENA]
¡û
>WENV180627577
OCQM01229842
[OCQM] human gut metagenome; human gut
74
-1
-
Ala
TGC
[ENA]
¡û
>WENV180633411
OCRA01004258
[OCRA] human gut metagenome; human gut
2673
2598
-
Ala
TGC
[ENA]
¡û
>WENV180826767
ODJZ01030745
[ODJZ] human metagenome; G_DNA_Stool
413
338
-
Ala
TGC
[ENA]
¡û
>WENV180909217
ODQJ01119984
[ODQJ] human metagenome; G_DNA_Stool
158
83
-
Ala
TGC
[ENA]
¡û
>WENV180914180
ODSV01018206
[ODSV] human metagenome; G_DNA_Stool
457
382
-
Ala
TGC
[ENA]
¡û
>WENV180926932
ODTL01092577
[ODTL] human metagenome; G_DNA_Stool
76
1
-
Ala
TGC
[ENA]
¡û
>WENV181022681
ODWW01008399
[ODWW] human metagenome; G_DNA_Stool
1
76
+
Ala
TGC
[ENA]
¡û
>WENV181022789
ODWW01026431
[ODWW] human metagenome; G_DNA_Stool
408
333
-
Ala
TGC
[ENA]
¡û
>WENV181030854
ODXJ01011006
[ODXJ] human metagenome; G_DNA_Stool
238
313
+
Ala
TGC
[ENA]
¡û
>WENV181047447
ODXZ01004314
[ODXZ] human metagenome; G_DNA_Stool
1473
1398
-
Ala
TGC
[ENA]
¡û
>WENV181072647
OEAN01011818
[OEAN] human metagenome; G_DNA_Stool
1213
1138
-
Ala
TGC
[ENA]
¡û
>WENV181089627
OEBA01055670
[OEBA] human metagenome; G_DNA_Stool
24
99
+
Ala
TGC
[ENA]
¡û
>WENV181194059
OEQP01003546
[OEQP] metagenome; Caecal content
340
415
+
Ala
TGC
[ENA]
¡û
>WENV181194495
OEQQ01011015
[OEQQ] metagenome; Caecal content
606
531
-
Ala
TGC
[ENA]
¡û
>WENV181197001
OEQZ01007421
[OEQZ] metagenome; Caecal content
553
478
-
Ala
TGC
[ENA]
¡û
>WENV181197188
OERA01001486
[OERA] metagenome; Caecal content
2299
2224
-
Ala
TGC
[ENA]
¡û
>WENV181197500
OERB01003891
[OERB] metagenome; Caecal content
551
476
-
Ala
TGC
[ENA]
¡û
>WENV181198409
OERE01001011
[OERE] metagenome; Caecal content
839
764
-
Ala
TGC
[ENA]
¡û
>WENV181198870
OERF01007269
[OERF] metagenome; Caecal content
925
850
-
Ala
TGC
[ENA]
¡û
>WENV181200663
OERL01001909
[OERL] metagenome; Caecal content
747
822
+
Ala
TGC
[ENA]
¡û
>WENV181203996
OERX01013816
[OERX] metagenome; Caecal content
390
315
-
Ala
TGC
[ENA]
¡û
>WENV181204302
OERY01007032
[OERY] metagenome; Caecal content
495
570
+
Ala
TGC
[ENA]
¡û
>WENV181204792
OERZ01021324
[OERZ] metagenome; Caecal content
537
462
-
Ala
TGC
[ENA]
¡û
>WENV181349337
OFMN01054251
[OFMN] human gut metagenome; human gut
231
306
+
Ala
TGC
[ENA]
¡û
>WENV181430556
OGCZ01013303
[OGCZ] metagenome; Human gut stool
715
640
-
Ala
TGC
[ENA]
¡û
>WENV181526677
OGHJ01024902
[OGHJ] metagenome; Human gut stool
1548
1473
-
Ala
TGC
[ENA]
¡û
>WENV181529105
OGHL01023331
[OGHL] metagenome; Human gut stool
926
851
-
Ala
TGC
[ENA]
¡û
>WENV181702343
OGPH01057757
[OGPH] human gut metagenome; faeces
458
383
-
Ala
TGC
[ENA]
¡û
>WENV181787526
OGRN01059315
[OGRN] human gut metagenome; faeces
238
313
+
Ala
TGC
[ENA]
¡û
>WENV181813137
OGTB01026523
[OGTB] human gut metagenome; faeces
646
571
-
Ala
TGC
[ENA]
¡û
>WENV181894279
OGXQ01061639
[OGXQ] human gut metagenome; faeces
79
154
+
Ala
TGC
[ENA]
¡û
>WENV181996232
OHAT01067242
[OHAT] human gut metagenome; faeces
319
244
-
Ala
TGC
[ENA]
¡û
>WENV182277796
OHUR01045158
[OHUR] human gut metagenome; feces
466
391
-
Ala
TGC
[ENA]
¡û
>WENV182287635
OHVS01015571
[OHVS] human gut metagenome; feces
644
569
-
Ala
TGC
[ENA]
¡û
>WENV182295156
OHWE01019651
[OHWE] human gut metagenome; feces
419
494
+
Ala
TGC
[ENA]
¡û
>WENV182298421
OHWI01013121
[OHWI] human gut metagenome; feces
633
558
-
Ala
TGC
[ENA]
¡û
>WENV182306186
OHXC01005069
[OHXC] human gut metagenome; feces
2278
2203
-
Ala
TGC
[ENA]
¡û
>WENV182325502
OHYS01018569
[OHYS] human gut metagenome; feces
646
571
-
Ala
TGC
[ENA]
¡û
>WENV182354589
OIBN01025138
[OIBN] human gut metagenome; feces
645
570
-
Ala
TGC
[ENA]
¡û
>WENV182380964
OIDP01027904
[OIDP] human gut metagenome; feces
474
399
-
Ala
TGC
[ENA]
¡û
>WENV182622511
OJKJ01048954
[OJKJ] metagenome; faeces
150
75
-
Ala
TGC
[ENA]
¡û
>WENV182749328
OJQX01030925
[OJQX] human gut metagenome; stool sample
239
314
+
Ala
TGC
[ENA]
¡û
>WENV182869917
OKRT01050163
[OKRT] human gut metagenome; faeces
480
405
-
Ala
TGC
[ENA]
¡û
>WENV183037789
OLGA01079022
[OLGA] human gut metagenome; faeces
340
265
-
Ala
TGC
[ENA]
¡û
>WENV183306508
OLSX01049695
[OLSX] human gut metagenome; faeces
644
569
-
Ala
TGC
[ENA]
¡û
>WENV183387025
OLYV01023375
[OLYV] human gut metagenome; feces
599
524
-
Ala
TGC
[ENA]
¡û
>WENV183413570
OMAN01013890
[OMAN] human gut metagenome; feces
183
258
+
Ala
TGC
[ENA]
¡û
>WENV183419505
OMAZ01003292
[OMAZ] human gut metagenome; feces
2704
2629
-
Ala
TGC
[ENA]
¡û
>WENV183432944
OMBS01007486
[OMBS] human gut metagenome; feces
459
534
+
Ala
TGC
[ENA]
¡û
>WENV183481945
OMFK01026788
[OMFK] human gut metagenome; feces
202
277
+
Ala
TGC
[ENA]
¡û
>WENV183484289
OMFO01010711
[OMFO] human gut metagenome; feces
394
469
+
Ala
TGC
[ENA]
¡û
>WENV183488881
OMFZ01004310
[OMFZ] human gut metagenome; feces
426
501
+
Ala
TGC
[ENA]
¡û
>WENV183538189
OOAH01001937
[OOAH] human gut metagenome; human gut
191
266
+
Ala
TGC
[ENA]
¡û
>WENV183555831
OOBN01017397
[OOBN] human gut metagenome; human gut
1548
1473
-
Ala
TGC
[ENA]
¡û
>WENV183576008
OOCI01019308
[OOCI] human gut metagenome; human gut
1262
1187
-
Ala
TGC
[ENA]
¡û
>WENV183602411
OODJ01055681
[OODJ] human gut metagenome; human gut
558
483
-
Ala
TGC
[ENA]
¡û
>WENV183609968
OODR01015430
[OODR] human gut metagenome; human gut
437
512
+
Ala
TGC
[ENA]
¡û
>WENV170637895
JFBN01368804
[JFBN] chicken gut metagenome; ceca of Broiler chicken
294
219
-
Ala
TGC
[ENA]
¡û
>W1810875970
QUGI01000006
Bacillota
Pseudoflavonifractor sp. AF19-9AC [QUGI]
10765
10690
-
Ala
TGC
[ENA]
¡û
>W2010256938
CABJCN020000006
Bacillota
Clostridiales bacterium [CABJCN]
10765
10690
-
Ala
TGC
[ENA]
¡û
>W2110221642
JACJJE010000110
Bacillota
Pseudoflavonifractor capillosus An827 [JACJJE]
4
79
+
Ala
TGC
[ENA]
¡û
>W2110221646
JACJJE010000166
Bacillota
Pseudoflavonifractor capillosus An827 [JACJJE]
300
373
+
Ala
TGC
[ENA]
¡û
>W2110221648
JACJJE010000192
Bacillota
Pseudoflavonifractor capillosus An827 [JACJJE]
181
254
+
Ala
TGC
[ENA]
¡û
>C231509606
CP107198
Bacillota
Flavonifractor plautii [CP107198]
2837897
2837972
+
Ala
TGC
-
¡û
>C231509616
CP107198
Bacillota
Flavonifractor plautii [CP107198]
3968671
3968746
+
Ala
TGC
-
¡û
>C231509620
CP107198
Bacillota
Flavonifractor plautii [CP107198]
3974918
3974993
+
Ala
TGC
-
¡û
>C161087377
CP015406
Bacillota
Flavonifractor plautii YL31 [CP015406]
86260
86335
+
Ala
TGC
[Ensembl]
¡û
>C161087387
CP015406
Bacillota
Flavonifractor plautii YL31 [CP015406]
1081436
1081511
+
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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