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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3285 (10 seq.)
>W1710871810
LMLM01000028
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
171097
171002
-
SeC
TCA
[ENA]
¡û
>W1710874788
LMNW01000035
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
53674
53768
+
SeC
TCA
[ENA]
¡û
>W2012089029
VMEK01000001
Betaproteobacteria
Zoogloea ramigera ATCC 19544 [VMEK]
849348
849443
+
SeC
TCA
[ENA]
¡û
>W2012325759
WHIV01000003
Betaproteobacteria
Duganella sp. FT27W [WHIV]
914408
914503
+
SeC
TCA
[ENA]
¡û
>W2110500164
JAFICD010000001
Betaproteobacteria
Duganella sp. 1411 [JAFICD]
2297570
2297665
+
SeC
TCA
[ENA]
¡û
>C241354679
CP140152
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [CP140152]
4056257
4056352
+
SeC
TCA
-
¡û
>W1610734156
LMLM01000028
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
171097
171002
-
SeC
TCA
[ENA]
¡û
>W1610737134
LMNW01000035
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
53674
53768
+
SeC
TCA
[ENA]
¡û
>W1720002065
LROM01000088
Betaproteobacteria
Duganella phyllosphaerae [LROM]
19681
19776
+
SeC
TCA
[ENA]
¡û
>W132000184
ARJV01000027
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
849434
849524
+
seC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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