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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.330315 (36 seq.)
>W1710894561
LNGM01000015
Gammaproteobacteria
Photobacterium sanguinicancri [LNGM]
12204
12280
+
Arg
CCG
[ENA]
¡û
>W1711143288
LVHF01000015
Gammaproteobacteria
Photobacterium jeanii [LVHF]
12913
12989
+
Arg
CCG
[ENA]
¡û
>W1711271441
LZEZ01000019
Gammaproteobacteria
Photobacterium aquimaris [LZEZ]
32770
32694
-
Arg
CCG
[ENA]
¡û
>W1711271574
LZFA01000050
Gammaproteobacteria
Photobacterium aquimaris [LZFA]
17651
17727
+
Arg
CCG
[ENA]
¡û
>W1711351431
MDCJ01000002
Gammaproteobacteria
Vibrio scophthalmi [MDCJ]
3271428
3271352
-
Arg
CCG
[ENA]
¡û
>C171047172
CP016307
Gammaproteobacteria
Vibrio scophthalmi VS-12 [CP016307, CP016308]
110973
110897
-
Arg
CCG
-
¡û
>C017515
CR354531
Gammaproteobacteria
Photobacterium profundum [CR354531]
96967
97043
+
Arg
CCG
[Ensembl]
¡û
>WENV170012488
ASRK01005438
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
511
587
+
Arg
CCG
[ENA]
¡û
>WENV170704229
LLEJ01000289
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
6028
6104
+
Arg
CCG
[ENA]
¡û
>C191100203
CP033078
Gammaproteobacteria
Vibrio zhugei HBUAS61001 [CP033077, CP033078]
69448
69524
+
Arg
CCG
-
¡û
>W1911114234
NOIF01000078
Gammaproteobacteria
Photobacterium sanguinicancri CAIM 1827 [NOIF]
195
119
-
Arg
CCG
[ENA]
¡û
>W1911114274
NOIF01000335
Gammaproteobacteria
Photobacterium sanguinicancri CAIM 1827 [NOIF]
767
843
+
Arg
CCG
[ENA]
¡û
>W1810054763
PDFR01000108
Gammaproteobacteria
Vibrio vulnificus SS108-A3A [PDFR]
91255
91179
-
Arg
CCG
[ENA]
¡û
>W1810405589
PYLZ01000007
Gammaproteobacteria
Photobacterium swingsii DSM 24669 [PYLZ]
12982
13058
+
Arg
CCG
[ENA]
¡û
>W1810405960
PYMC01000007
Gammaproteobacteria
Photobacterium lipolyticum DSM 16190 [PYMC]
222598
222522
-
Arg
CCG
[ENA]
¡û
>W1810406098
PYMD01000006
Gammaproteobacteria
Photobacterium jeanii DSM 100339 [PYMD]
12744
12820
+
Arg
CCG
[ENA]
¡û
>W1810407070
PYMK01000027
Gammaproteobacteria
Photobacterium aquimaris BS2 [PYMK]
17313
17389
+
Arg
CCG
[ENA]
¡û
>W1810407163
PYML01000006
Gammaproteobacteria
Photobacterium aquimaris BS1 [PYML]
208136
208060
-
Arg
CCG
[ENA]
¡û
>W2011008818
NOIF01000078
Gammaproteobacteria
Photobacterium sanguinicancri CAIM 1827 [NOIF]
195
119
-
Arg
CCG
[ENA]
¡û
>W2011008858
NOIF01000335
Gammaproteobacteria
Photobacterium sanguinicancri CAIM 1827 [NOIF]
767
843
+
Arg
CCG
[ENA]
¡û
>W2011858610
UNRL01000005
Gammaproteobacteria
Photobacterium sp. Alg240-V54 [UNRL]
17270
17346
+
Arg
CCG
[ENA]
¡û
>W2110359285
JADNRT010000001
Gammaproteobacteria
Vibrio sp. VB16 [JADNRT]
3277784
3277860
+
Arg
CCG
[ENA]
¡û
>C231006043
AP024850
Gammaproteobacteria
Photobacterium sanguinicancri CECT 7579 [AP024850, AP024851]
46838
46914
+
Arg
CCG
-
¡û
>C231006210
AP024852
Gammaproteobacteria
Photobacterium swingsii CECT 7576 [AP024852, AP024853]
41120
41196
+
Arg
CCG
-
¡û
>C231008203
AP024911
Gammaproteobacteria
Vibrio zhugei KCTC 62784 [AP024911, AP024912]
77238
77314
+
Arg
CCG
-
¡û
>C231242245
CP087590
Gammaproteobacteria
Vibrio sp. VB16 [CP087590, CP087591]
44737
44813
+
Arg
CCG
-
¡û
>C231309496
CP091975
Gammaproteobacteria
Vibrio sp. DW001 [CP091975, CP091976]
46064
46140
+
Arg
CCG
-
¡û
>W1511657222
LELC01000046
Gammaproteobacteria
Photobacterium swingsii CAIM 1393 [LELC]
12387
12463
+
Arg
CCG
[ENA]
¡û
>W11175215
AFWD01000063
Gammaproteobacteria
Vibrio sp. N418 [AFWD]
41870
41794
-
Arg
CCG
[ENA]
¡û
>W11175269
AFWE01000124
Gammaproteobacteria
Vibrio scophthalmi LMG 19158 [AFWE]
264
188
-
Arg
CCG
[ENA]
¡û
>W11175336
AFWF01000174
Gammaproteobacteria
Vibrio ichthyoenteri ATCC 700023 [AFWF]
460
384
-
Arg
CCG
[ENA]
¡û
>C161097145
CP016414
Gammaproteobacteria
Vibrio scophthalmi VS-05 [CP016414, CP016415]
3087698
3087774
+
Arg
CCG
[Ensembl]
¡û
>W1610754965
LNGM01000015
Gammaproteobacteria
Photobacterium sanguinicancri [LNGM]
12204
12280
+
Arg
CCG
[ENA]
¡û
>W1610954296
LVHF01000015
Gammaproteobacteria
Photobacterium jeanii [LVHF]
12913
12989
+
Arg
CCG
[ENA]
¡û
>W1611031005
LZEZ01000019
Gammaproteobacteria
Photobacterium aquimaris [LZEZ]
32770
32694
-
Arg
CCG
[ENA]
¡û
>W1611031138
LZFA01000050
Gammaproteobacteria
Photobacterium aquimaris [LZFA]
17651
17727
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK