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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.331636 (29 seq.)
>WENV180365051
OBOB01005084
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
454
379
-
Ala
TGC
[ENA]
¡û
>WENV180377940
OBON01211069
[OBON] marine metagenome; sea water
60
133
+
Ala
TGC
[ENA]
¡û
>WENV180636596
OCRF01021794
[OCRF] marine metagenome; niskin bottle
516
442
-
Ala
TGC
[ENA]
¡û
>WENV180689393
OCZA010859690
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
82
156
+
Ala
TGC
[ENA]
¡û
>WENV181306722
OFIM01001711
[OFIM] marine metagenome; seawater
372
445
+
Ala
TGC
[ENA]
¡û
>WENV182560090
OJDS01014998
[OJDS] seawater metagenome; Sea water
912
839
-
Ala
TGC
[ENA]
¡û
>ENV08002220
ABPP01000958
microbial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
365
437
+
Ala
TGC
[ENA]
¡û
>ENV08002233
ABPP01003192
microbial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
359
431
+
Ala
TGC
[ENA]
¡û
>ENV08002347
ABPR01012243
microbial mat metagenome; Guerrero Negro Hypersaline Mat 03; altitude 310m AMSL; sample depth 1m below water level, 2-3mm depth into the mat
311
239
-
Ala
TGC
[ENA]
¡û
>CHL1810006176
JX457480
Euglenozoa
Monomorphina aenigmatica UTEX1284 (JX457480)
72390
72318
-
Ala
TGC
[ENA]
¡û
>CHL090100347
AF166114
Viridiplantae
Mesostigma viride
86170
86244
+
Ala
TGC
[ENA]
¡û
>CHL090100353
AF166114
Viridiplantae
Mesostigma viride
115818
115744
-
Ala
TGC
[ENA]
¡û
>CHL090103164
U38804
Rhodophyta
Porphyra purpurea
149405
149479
+
Ala
TGC
[ENA]
¡û
>CHL090103168
U38804
Rhodophyta
Porphyra purpurea
187848
187922
+
Ala
TGC
[ENA]
¡û
>SRA1005222
SRR006907.121356
metagenomic water samples (SRP000427)
212
139
-
Ala
TGC
[SRA]
>W2010372696
CZCZ02000017
Cyanobacteriota
Planktothrix rubescens PCC 7821 [CZCZ]
30119
30046
-
Ala
TGC
[ENA]
¡û
>W2010372698
CZDF01000058
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
341
268
-
Ala
TGC
[ENA]
¡û
>W2010372707
CZDF01000132
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
1508461
1508388
-
Ala
TGC
[ENA]
¡û
>C211085958
CP051168
Cyanobacteriota
[Phormidium] sp. ETS-05 [CP051168]
1035824
1035899
+
Ala
TGC
-
¡û
>C211085960
CP051168
Cyanobacteriota
[Phormidium] sp. ETS-05 [CP051168]
1041628
1041703
+
Ala
TGC
-
¡û
>C211085968
CP051168
Cyanobacteriota
[Phormidium] sp. ETS-05 [CP051168]
2605517
2605592
+
Ala
TGC
-
¡û
>C231651901
LR882958
Cyanobacteriota
Planktothrix rubescens PCC7821 [LR882958]
3233831
3233904
+
Ala
TGC
-
¡û
>C231651927
LR882958
Cyanobacteriota
Planktothrix rubescens PCC7821 [LR882958]
799137
799064
-
Ala
TGC
-
¡û
>C241328058
CP136572
Cyanobacteriota
Planktothrix sp. GU0601_MAG3 [CP136572]
1380582
1380655
+
Ala
TGC
-
¡û
>C241328094
CP136572
Cyanobacteriota
Planktothrix sp. GU0601_MAG3 [CP136572]
82250
82177
-
Ala
TGC
-
¡û
>C131004228
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
8135954
8135879
-
Ala
TGC
[Ensembl]
¡û
>C131004234
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
6604594
6604519
-
Ala
TGC
[Ensembl]
¡û
>C131004236
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
6598066
6597991
-
Ala
TGC
[Ensembl]
¡û
>ENV000721
AJ879826
Environmental sample from ENV division of INSDC
553
628
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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