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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.333822 (40 seq.)
>W1711903054
MZGX01000004
Bacillota
Ruminiclostridium hungatei [MZGX]
118146
118070
-
Asp
GTC
[ENA]
¡û
>W1711903085
MZGX01000033
Bacillota
Ruminiclostridium hungatei [MZGX]
6838
6762
-
Asp
GTC
[ENA]
¡û
>W131098544
AORV01000046
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
37194
37118
-
Asp
GTC
[ENA]
¡û
>W131098556
AORV01000064
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
7784
7708
-
Asp
GTC
[ENA]
¡û
>W131204222
ATAY01000034
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
121519
121595
+
Asp
GTC
[ENA]
¡û
>W131204241
ATAY01000094
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
137041
136965
-
Asp
GTC
[ENA]
¡û
>w020764
AAVC01000089
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
3510
3588
+
Asp
GTC
[ENA]
¡û
>W141279272
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
1307277
1307201
-
Asp
GTC
[ENA]
¡û
>W141279278
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
686524
686448
-
Asp
GTC
[ENA]
¡û
>WENV170561198
CZCA01004181
[CZCA] anaerobic digester metagenome; anaerobic digester
3879
3955
+
Asp
GTC
[ENA]
¡û
>WENV170561229
CZCA01004861
[CZCA] anaerobic digester metagenome; anaerobic digester
2362
2438
+
Asp
GTC
[ENA]
¡û
>WENV170563523
CZCB01020519
[CZCB] anaerobic digester metagenome; anaerobic digester
258
182
-
Asp
GTC
[ENA]
¡û
>WENV170563769
CZCB01028860
[CZCB] anaerobic digester metagenome; anaerobic digester
3499
3575
+
Asp
GTC
[ENA]
¡û
>WENV170689854
LFRM01314505
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12236
12312
+
Asp
GTC
[ENA]
¡û
>WENV170719376
LSQX01112352
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
18342
18418
+
Asp
GTC
[ENA]
¡û
>WENV170967571
MTKW01002135
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
12105
12029
-
Asp
GTC
[ENA]
¡û
>WENV170967800
MTKW01003584
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
16206
16282
+
Asp
GTC
[ENA]
¡û
>WENV170968006
MTKW01005245
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
359
283
-
Asp
GTC
[ENA]
¡û
>WENV170968499
MTKW01010239
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6549
6473
-
Asp
GTC
[ENA]
¡û
>W141561058
JHYD01000002
Bacillota
Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 [JHYD]
387124
387200
+
Asp
GTC
[ENA]
¡û
>W141561083
JHYD01000024
Bacillota
Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 [JHYD]
103964
104040
+
Asp
GTC
[ENA]
¡û
>C09103088
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3456137
3456061
-
Asp
GTC
[Ensembl]
¡û
>C09103094
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
2920520
2920444
-
Asp
GTC
[Ensembl]
¡û
>W1810677415
QKMR01000007
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
56481
56405
-
Asp
GTC
[ENA]
¡û
>W1810677437
QKMR01000018
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
77154
77230
+
Asp
GTC
[ENA]
¡û
>W2010338523
CACZUK010000076
Bacillota
Ruminococcaceae bacterium [CACZUK]
14181
14257
+
Asp
GTC
[ENA]
¡û
>W2011480046
RQSR01000005
Bacillota
Ruminiclostridium sp. MA18 [RQSR]
86092
86168
+
Asp
GTC
[ENA]
¡û
>W2011480054
RQSR01000009
Bacillota
Ruminiclostridium sp. MA18 [RQSR]
39952
39876
-
Asp
GTC
[ENA]
¡û
>W10105870
ACXX01000005
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
6496
6420
-
Asp
GTC
[ENA]
¡û
>W10105879
ACXX01000008
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
29853
29777
-
Asp
GTC
[ENA]
¡û
>C211145700
CP061336
Bacillota
Ruminiclostridium herbifermentans MA18 [CP061336]
726071
726147
+
Asp
GTC
-
¡û
>C211145707
CP061336
Bacillota
Ruminiclostridium herbifermentans MA18 [CP061336]
1121195
1121271
+
Asp
GTC
-
¡û
>C231624763
CP119677
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [CP119677]
1059581
1059657
+
Asp
GTC
-
¡û
>C231624798
CP119677
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [CP119677]
4454299
4454223
-
Asp
GTC
-
¡û
>W11108215
ACXX02000013
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
134806
134882
+
Asp
GTC
[ENA]
¡û
>W11108223
ACXX02000014
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
108065
108141
+
Asp
GTC
[ENA]
¡û
>C121009820
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
919542
919618
+
Asp
GTC
[Ensembl]
¡û
>C121009855
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4138309
4138233
-
Asp
GTC
[Ensembl]
¡û
>W1610043735
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49348
49424
+
Asp
GTC
[ENA]
¡û
>W1710040895
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49348
49424
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK