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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.334287 (12 seq.)
>WENV180345767
OBLN01004750
[OBLN] sediment metagenome; sediment
46
122
+
Ile
GAT
[ENA]
¡û
>WENV181411196
OGCI01016058
[OGCI] hot springs metagenome; Hot spring water
252
328
+
Ile
GAT
[ENA]
¡û
>WENV170642468
JFJP01041415
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2284
2208
-
Ile
GAT
[ENA]
¡û
>WENV170658609
JTFP01161003
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
154
230
+
Ile
GAT
[ENA]
¡û
>WENV170690532
LFRM01346691
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3162
3238
+
Ile
GAT
[ENA]
¡û
>W09108810
ABTP01000004
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
350931
351007
+
Ile
GAT
[ENA]
¡û
>W09108812
ABTP01000004
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
352410
352486
+
Ile
GAT
[ENA]
¡û
>C231425932
CP100351
Thermodesulfobacteriota
Desulfomicrobium sp. ZS1 [CP100351]
3828258
3828334
+
Ile
GAT
-
¡û
>C231425944
CP100351
Thermodesulfobacteriota
Desulfomicrobium sp. ZS1 [CP100351]
2626934
2626858
-
Ile
GAT
-
¡û
>C10104939
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
310370
310446
+
Ile
GAT
[Ensembl]
¡û
>C161069023
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
1524066
1524142
+
Ile
GAT
[Ensembl]
¡û
>C161069059
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
458233
458157
-
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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