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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.33431 (86 seq.)
>W1710797156
LJSU01000023
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
7407
7318
-
Ser
GCT
[ENA]
¡û
>W1710987784
LPUY01000075
Alphaproteobacteria
Tritonibacter horizontis O3.65 [LPUY]
134715
134626
-
Ser
GCT
[ENA]
¡û
>W1711229277
LXYH01000007
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
2565
2476
-
Ser
GCT
[ENA]
¡û
>W1711388537
MEHS01000004
Alphaproteobacteria
Rhodobaca barguzinensis [MEHS]
2245529
2245618
+
Ser
GCT
[ENA]
¡û
>W1711388567
MEHT01000009
Alphaproteobacteria
Roseinatronobacter thiooxidans [MEHT]
400471
400560
+
Ser
GCT
[ENA]
¡û
>W1711456288
MJAP01000018
Alphaproteobacteria
Natronohydrobacter thiooxidans [MJAP]
52148
52059
-
Ser
GCT
[ENA]
¡û
>W1711572432
MNBW01000003
Alphaproteobacteria
Nioella nitratireducens [MNBW]
158411
158500
+
Ser
GCT
[ENA]
¡û
>W1711709221
MSYQ01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYQ]
483466
483555
+
Ser
GCT
[ENA]
¡û
>W1711709265
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
533598
533687
+
Ser
GCT
[ENA]
¡û
>W1712085165
NHTQ01000007
Alphaproteobacteria
Rhodobacteraceae bacterium WFHF2C18 [NHTQ]
167569
167480
-
Ser
GCT
[ENA]
¡û
>WENV180298602
OBJA01466089
[OBJA] soil metagenome; sediment, water from around vicinity
204
115
-
Ser
GCT
[ENA]
¡û
>WENV181233575
OFET01000009
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
298606
298517
-
Ser
GCT
[ENA]
¡û
>WENV181233760
OFET01000075
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
155509
155598
+
Ser
GCT
[ENA]
¡û
>WENV181234229
OFEU01000009
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
298606
298517
-
Ser
GCT
[ENA]
¡û
>WENV181234467
OFEU01000179
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
61308
61397
+
Ser
GCT
[ENA]
¡û
>WENV181390867
OFRQ01001281
[OFRQ] seawater metagenome; seawater
1795
1706
-
Ser
GCT
[ENA]
¡û
>W141278739
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
741244
741155
-
Ser
GCT
[ENA]
¡û
>WENV183625973
OOGH01001273
[OOGH] marine metagenome; seawater
1795
1706
-
Ser
GCT
[ENA]
¡û
>WENV183627859
OOGL01063455
[OOGL] marine metagenome; sea ice
228
139
-
Ser
GCT
[ENA]
¡û
>ENV08000038
ABLU01069156
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
22
111
+
Ser
GCT
[ENA]
¡û
>WENV183720932
PDWJ01049677
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2065
1976
-
Ser
GCT
[ENA]
¡û
>WENV170015683
AZII01002760
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
515
426
-
Ser
GCT
[ENA]
¡û
>WENV170668324
LADL02002910
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
638
727
+
Ser
GCT
[ENA]
¡û
>WENV170683059
LFIK01004087
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
7171
7260
+
Ser
GCT
[ENA]
¡û
>WENV170683491
LFIK01013155
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
163
74
-
Ser
GCT
[ENA]
¡û
>WENV170705192
LLEQ01000218
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1985
1896
-
Ser
GCT
[ENA]
¡û
>WENV170937112
MDTG01285977
[MDTG] marine metagenome; seawater
3460
3549
+
Ser
GCT
[ENA]
¡û
>W1910443124
FWFU01000002
Alphaproteobacteria
Roseovarius halotolerans CECT 8110 [FWFU]
119718
119629
-
Ser
GCT
[ENA]
¡û
>W1911582623
PHNT01000007
Alphaproteobacteria
Roseovarius sp. N53 [PHNT]
81158
81069
-
Ser
GCT
[ENA]
¡û
>W1911638548
PVWS01000028
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
19246
19157
-
Ser
GCT
[ENA]
¡û
>W1911653478
QDFI01000049
Alphaproteobacteria
Rhodobacteraceae bacterium LMIT002 [QDFI]
8516
8427
-
Ser
GCT
[ENA]
¡û
>W1810061268
PDNI01000058
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
218138
218227
+
Ser
GCT
[ENA]
¡û
>W1810329446
PUHN01000002
Alphaproteobacteria
Rhodobacteraceae bacterium WD3A24 [PUHN]
24864
24953
+
Ser
GCT
[ENA]
¡û
>W1810494720
QBFD01000022
Alphaproteobacteria
Sulfitobacter sp. DFL-14 [QBFD]
106756
106667
-
Ser
GCT
[ENA]
¡û
>W1810543598
QDKM01000003
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
36019
35930
-
Ser
GCT
[ENA]
¡û
>W1810685898
QKZQ01000001
Alphaproteobacteria
Roseinatronobacter thiooxidans DSM 13087 [QKZQ]
401635
401724
+
Ser
GCT
[ENA]
¡û
>W1810719949
QNQP01000022
Alphaproteobacteria
Roseovarius dicentrarchi YLY04 [QNQP]
50405
50494
+
Ser
GCT
[ENA]
¡û
>W1810721916
QNTQ01000026
Alphaproteobacteria
Rhodosalinus halophilus E84 [QNTQ]
7578
7489
-
Ser
GCT
[ENA]
¡û
>W1810722635
QNVJ01000038
Alphaproteobacteria
Alkalilacustris brevis 34079 [QNVJ]
15294
15383
+
Ser
GCT
[ENA]
¡û
>W1810733757
QOHR01000014
Alphaproteobacteria
Rhodosalinus sediminis WDN1C137 [QOHR]
70022
69933
-
Ser
GCT
[ENA]
¡û
>W2010406488
FWFU01000002
Alphaproteobacteria
Roseovarius halotolerans CECT 8110 [FWFU]
119718
119629
-
Ser
GCT
[ENA]
¡û
>W2010451985
JAAEAJ010000091
Alphaproteobacteria
Rhodovulum sulfidophilum SE1 [JAAEAJ]
1059
1148
+
Ser
GCT
[ENA]
¡û
>W2010569781
JAATOW010000060
Alphaproteobacteria
Pseudooceanicola sp. HF7 [JAATOW]
7143
7232
+
Ser
GCT
[ENA]
¡û
>W2010666459
JACBXS010000017
Alphaproteobacteria
Rhodobacteraceae bacterium 2376 [JACBXS]
341
252
-
Ser
GCT
[ENA]
¡û
>W2010727846
JACIGD010000002
Alphaproteobacteria
Rhodobaca bogoriensis DSM 18756 LBB1 [JACIGD]
653643
653732
+
Ser
GCT
[ENA]
¡û
>W2010774075
LIGK01000140
Alphaproteobacteria
Salipiger aestuarii 328 [LIGK]
371
460
+
Ser
GCT
[ENA]
¡û
>W2010774118
LIGL01000173
Alphaproteobacteria
Salipiger aestuarii 329 [LIGL]
371
460
+
Ser
GCT
[ENA]
¡û
>W2010774160
LIQE01000135
Alphaproteobacteria
Salipiger aestuarii AD8 [LIQE]
1859
1770
-
Ser
GCT
[ENA]
¡û
>W2011193360
PHNT01000007
Alphaproteobacteria
Roseovarius sp. N53 [PHNT]
81158
81069
-
Ser
GCT
[ENA]
¡û
>W2011230274
PVWS01000028
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
19246
19157
-
Ser
GCT
[ENA]
¡û
>W2011237037
QDFI01000049
Alphaproteobacteria
Rhodobacteraceae bacterium LMIT002 [QDFI]
8516
8427
-
Ser
GCT
[ENA]
¡û
>W2011353702
RAPE01000001
Alphaproteobacteria
Roseovarius sp. HN-E21 [RAPE]
1369107
1369018
-
Ser
GCT
[ENA]
¡û
>W2011389128
RBXI01000004
Alphaproteobacteria
Roseovarius halotolerans DSM 29507 [RBXI]
801275
801364
+
Ser
GCT
[ENA]
¡û
>W2011521812
RZWH01000005
Alphaproteobacteria
Rhodobacteraceae bacterium CCMM004 [RZWH]
193800
193889
+
Ser
GCT
[ENA]
¡û
>W2011555363
SELO01000020
Alphaproteobacteria
Tropicimonas sp. IMCC6043 [SELO]
5235
5146
-
Ser
GCT
[ENA]
¡û
>W2011641034
SMUV01000064
Alphaproteobacteria
Ruegeria sp. 318-1 [SMUV]
147017
147106
+
Ser
GCT
[ENA]
¡û
>W2011657681
SODJ01000002
Alphaproteobacteria
Rhodobaca barguzinensis DSM 19920 [SODJ]
90656
90567
-
Ser
GCT
[ENA]
¡û
>W2011665531
SORN01000002
Alphaproteobacteria
Rhodobaca bogoriensis DSM 18756 [SORN]
616028
616117
+
Ser
GCT
[ENA]
¡û
>W2011977442
VCNK01000043
Alphaproteobacteria
Phaeobacter sp. B1627 [VCNK]
750
661
-
Ser
GCT
[ENA]
¡û
>W2012022117
VFPT01000001
Alphaproteobacteria
Roseinatronobacter monicus DSM 18423 [VFPT]
1125440
1125351
-
Ser
GCT
[ENA]
¡û
>W2110447478
JAESIL010000017
Alphaproteobacteria
Rhodovulum visakhapatnamense AB19 [JAESIL]
46968
46879
-
Ser
GCT
[ENA]
¡û
>W2110447537
JAESIM010000045
Alphaproteobacteria
Rhodovulum visakhapatnamense AB26 [JAESIM]
7289
7378
+
Ser
GCT
[ENA]
¡û
>W2110447967
JAESJG010000036
Alphaproteobacteria
Rhodovulum sulfidophilum AB22 [JAESJG]
25295
25384
+
Ser
GCT
[ENA]
¡û
>W2110448021
JAESJH010000023
Alphaproteobacteria
Rhodovulum sulfidophilum AB23 [JAESJH]
60256
60167
-
Ser
GCT
[ENA]
¡û
>W2110494047
JAFFOB010000009
Alphaproteobacteria
Roseitranquillus sediminis MCCB 386 [JAFFOB]
64258
64347
+
Ser
GCT
[ENA]
¡û
>W2110566636
JAGQDH010000002
Alphaproteobacteria
Roseovarius sp. SHN287 [JAGQDH]
87774
87863
+
Ser
GCT
[ENA]
¡û
>C211381831
CP080623
Alphaproteobacteria
Roseovarius sp. SCSIO 43702 [CP080623]
3268268
3268357
+
Ser
GCT
-
¡û
>W2110751690
NHRZ01000018
Alphaproteobacteria
Rhodovulum sulfidophilum IM796 [NHRZ]
74941
74852
-
Ser
GCT
[ENA]
¡û
>C231636154
CP121113
Alphaproteobacteria
Paracoccaceae bacterium S2 [CP121113]
2157285
2157374
+
Ser
GCT
-
¡û
>C241035947
CP031598
Alphaproteobacteria
Roseovarius indicus DSM 26383 [CP031598]
4200706
4200617
-
Ser
GCT
-
¡û
>W2310026753
BSPU01000001
Alphaproteobacteria
Sulfitobacter porphyrae NBRC 109054 [BSPU]
412726
412637
-
Ser
GCT
[ENA]
¡û
>C161001441
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
1205990
1206079
+
Ser
GCT
[Ensembl]
¡û
>C161001483
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
903583
903494
-
Ser
GCT
[Ensembl]
¡û
>W1610190091
FBYC01000004
Alphaproteobacteria
Roseibaca calidilacus HL-91 [FBYC]
1363301
1363212
-
Ser
GCT
[ENA]
¡û
>W1610661113
LJSU01000023
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
7407
7318
-
Ser
GCT
[ENA]
¡û
>W1610842728
LPUY01000075
Alphaproteobacteria
Tritonibacter horizontis O3.65 [LPUY]
134715
134626
-
Ser
GCT
[ENA]
¡û
>W1611013147
LXYH01000007
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
2565
2476
-
Ser
GCT
[ENA]
¡û
>WENV081118
ABEF01029239
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
396
305
-
Ser
GCT
[ENA]
>W1710083065
BDIY01000021
Alphaproteobacteria
Roseovarius sp. A-2 [BDIY]
3571
3660
+
Ser
GCT
[ENA]
¡û
>W1710191707
FBYC01000004
Alphaproteobacteria
Roseibaca calidilacus HL-91 [FBYC]
1363301
1363212
-
Ser
GCT
[ENA]
¡û
>W1710515029
FNBL01000003
Alphaproteobacteria
Celeribacter baekdonensis [FNBL]
190501
190590
+
Ser
GCT
[ENA]
¡û
>W1710524238
FNIO01000004
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
328660
328749
+
Ser
GCT
[ENA]
¡û
>W1710543612
FOAC01000003
Alphaproteobacteria
Roseovarius nanhaiticus [FOAC]
84512
84601
+
Ser
GCT
[ENA]
¡û
>W1710589249
FQZZ01000004
Alphaproteobacteria
Lutimaribacter pacificus [FQZZ]
70282
70193
-
Ser
GCT
[ENA]
¡û
>W1710591907
FRCB01000006
Alphaproteobacteria
Roseovarius litoreus [FRCB]
146312
146401
+
Ser
GCT
[ENA]
¡û
>W1710598220
FTNV01000002
Alphaproteobacteria
Roseovarius nanhaiticus [FTNV]
519802
519713
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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