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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.334419 (19 seq.)
>W131221714
AUAR01000009
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
133594
133518
-
Arg
ACG
[ENA]
¡û
>W131221715
AUAR01000009
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
44397
44321
-
Arg
ACG
[ENA]
¡û
>WENV170640628
JFJP01023604
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
15
91
+
Arg
ACG
[ENA]
¡û
>WENV170640641
JFJP01023752
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4826
4750
-
Arg
ACG
[ENA]
¡û
>WENV170640643
JFJP01023756
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4696
4772
+
Arg
ACG
[ENA]
¡û
>WENV170657670
JTFP01007788
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
4003
4079
+
Arg
ACG
[ENA]
¡û
>WENV170658004
JTFP01042712
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1514
1438
-
Arg
ACG
[ENA]
¡û
>WENV170687571
LFRM01199722
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
621
545
-
Arg
ACG
[ENA]
¡û
>W09108824
ABTP01000006
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
19468
19392
-
Arg
ACG
[ENA]
¡û
>W09108830
ABTP01000009
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
58137
58061
-
Arg
ACG
[ENA]
¡û
>W2110301768
JADBGG010000014
Thermodesulfobacteriota
Desulfomicrobium macestii DSM 4194 [JADBGG]
21837
21913
+
Arg
ACG
[ENA]
¡û
>C231425907
CP100351
Thermodesulfobacteriota
Desulfomicrobium sp. ZS1 [CP100351]
1749167
1749243
+
Arg
ACG
-
¡û
>C231425908
CP100351
Thermodesulfobacteriota
Desulfomicrobium sp. ZS1 [CP100351]
1896930
1897006
+
Arg
ACG
-
¡û
>W2130019025
JADBGG010000051
Thermodesulfobacteriota
Desulfomicrobium macestii DSM 4194 [JADBGG]
1514
1438
-
Arg
ACG
[ENA]
¡û
>C10104986
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
1207700
1207624
-
Arg
ACG
[Ensembl]
¡û
>C10104987
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
1170295
1170219
-
Arg
ACG
[Ensembl]
¡û
>C161069048
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
1807576
1807500
-
Arg
ACG
[Ensembl]
¡û
>W1710568380
FOTO01000009
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
156190
156114
-
Arg
ACG
[ENA]
¡û
>W1710568399
FOTO01000014
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
23527
23603
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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