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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338931 (50 seq.)
>W1711414026
MGXL01000019
Gammaproteobacteria
Gammaproteobacteria bacterium RBG_16_57_12 [MGXL]
486
562
+
Met
CAT
[ENA]
¡û
>W131175720
ARJM01000032
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
13528
13604
+
Met
CAT
[ENA]
¡û
>W131175722
ARJM01000039
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
84892
84968
+
Met
CAT
[ENA]
¡û
>W131175725
ARJM01000041
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
30409
30485
+
Met
CAT
[ENA]
¡û
>WENV180042515
LQAF01000756
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
822
746
-
fMet
CAT
[ENA]
¡û
>WENV180042534
LQAF01002396
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1273
1349
+
fMet
CAT
[ENA]
¡û
>W141055171
AONB01000001
Gammaproteobacteria
Nitrincola nitratireducens AK23 [AONB]
29980
29904
-
Met
CAT
[ENA]
¡û
>W141055205
AONB01000027
Gammaproteobacteria
Nitrincola nitratireducens AK23 [AONB]
11705
11781
+
Met
CAT
[ENA]
¡û
>WENV181307155
OFIP01001581
[OFIP] marine metagenome; seawater
461
537
+
fMet
CAT
[ENA]
¡û
>WENV181313272
OFJF01008266
[OFJF] marine metagenome; seawater
201
125
-
fMet
CAT
[ENA]
¡û
>WENV181318988
OFKC01001643
[OFKC] marine metagenome; seawater
833
757
-
fMet
CAT
[ENA]
¡û
>WENV183618103
OOFN01000054
[OOFN] marine metagenome; seawater
1464
1388
-
fMet
CAT
[ENA]
¡û
>WENV183706546
PDWI01004649
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8911
8835
-
fMet
CAT
[ENA]
¡û
>WENV183718341
PDWJ01003422
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
11276
11200
-
fMet
CAT
[ENA]
¡û
>WENV170015510
AZIH01001814
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
697
773
+
Met
CAT
[ENA]
¡û
>WENV170015564
AZIH01005141
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
1914
1838
-
Met
CAT
[ENA]
¡û
>WENV170112546
CEGF01002734
[CEGF] microbial mat metagenome; grass silage
864
788
-
Met
CAT
[ENA]
¡û
>WENV170308168
CESL01007079
[CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
416
340
-
Met
CAT
[ENA]
¡û
>WENV170320995
CESR01022966
[CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
251
327
+
Met
CAT
[ENA]
¡û
>WENV170612308
FUWD012570045
[FUWD] metagenome; unknown
202
278
+
Met
CAT
[ENA]
¡û
>WENV170621252
FUWD013053689
[FUWD] metagenome; unknown
1285
1361
+
Met
CAT
[ENA]
¡û
>WENV170629433
FUWD013270154
[FUWD] metagenome; unknown
1285
1361
+
Met
CAT
[ENA]
¡û
>W1810680777
QKRX01000001
Gammaproteobacteria
Nitrincola tibetensis xg18 [QKRX]
166580
166504
-
Met
CAT
[ENA]
¡û
>W1810680820
QKRX01000020
Gammaproteobacteria
Nitrincola tibetensis xg18 [QKRX]
11809
11885
+
Met
CAT
[ENA]
¡û
>SRA1035668
SRR035089.351919
454 Sequencing (SRP001810)
330
406
+
Met
CAT
[SRA]
>W2012209712
VYTY01000001
Gammaproteobacteria
Nitrincola alkalisediminis JCM 19317 [VYTY]
78493
78417
-
fMet
CAT
[ENA]
¡û
>W2012209749
VYTY01000018
Gammaproteobacteria
Nitrincola alkalisediminis JCM 19317 [VYTY]
11821
11897
+
fMet
CAT
[ENA]
¡û
>W2012230759
WBOL01000005
Gammaproteobacteria
Nitrincola schmidtii NCAIM B.02626 [WBOL]
125795
125719
-
fMet
CAT
[ENA]
¡û
>W2012230803
WBOM01000002
Gammaproteobacteria
Nitrincola alkalilacustris NCAIM B.02612 [WBOM]
260466
260390
-
fMet
CAT
[ENA]
¡û
>C231131052
CP073347
Gammaproteobacteria
Marinobacterium rhizophilum D13-1 [CP073347]
3706211
3706287
+
fMet
CAT
-
¡û
>C231131084
CP073347
Gammaproteobacteria
Marinobacterium rhizophilum D13-1 [CP073347]
2368658
2368582
-
fMet
CAT
-
¡û
>C231131085
CP073347
Gammaproteobacteria
Marinobacterium rhizophilum D13-1 [CP073347]
2367847
2367771
-
fMet
CAT
-
¡û
>C231131086
CP073347
Gammaproteobacteria
Marinobacterium rhizophilum D13-1 [CP073347]
2340613
2340537
-
fMet
CAT
-
¡û
>C241087473
CP044222
Gammaproteobacteria
Nitrincola iocasae KXZD1103 [CP044222]
586945
587021
+
fMet
CAT
-
¡û
>C241087496
CP044222
Gammaproteobacteria
Nitrincola iocasae KXZD1103 [CP044222]
3034217
3034293
+
fMet
CAT
-
¡û
>W1511349161
JRLB01000002
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
9033
9109
+
Met
CAT
[ENA]
¡û
>W1511349174
JRLB01000034
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
9027
9103
+
Met
CAT
[ENA]
¡û
>W1511349191
JRLB01000092
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
11796
11872
+
Met
CAT
[ENA]
¡û
>C161091139
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
1243015
1243091
+
Met
CAT
[Ensembl]
¡û
>C161091140
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
1248590
1248666
+
Met
CAT
[Ensembl]
¡û
>C161091141
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
1276485
1276561
+
Met
CAT
[Ensembl]
¡û
>C161091177
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
5066989
5066913
-
Met
CAT
[Ensembl]
¡û
>W1610062693
BCNS01000088
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
21101
21025
-
Met
CAT
[ENA]
¡û
>W1610062740
BCNS01000208
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
45666
45590
-
Met
CAT
[ENA]
¡û
>W1610062741
BCNS01000208
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
44790
44714
-
Met
CAT
[ENA]
¡û
>W1610062742
BCNS01000208
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
16679
16603
-
Met
CAT
[ENA]
¡û
>W1710060169
BCNS01000088
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
21101
21025
-
Met
CAT
[ENA]
¡û
>W1710060216
BCNS01000208
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
45666
45590
-
Met
CAT
[ENA]
¡û
>W1710060217
BCNS01000208
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
44790
44714
-
Met
CAT
[ENA]
¡û
>W1710060218
BCNS01000208
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
16679
16603
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK