This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339575 (47 seq.)
>W1710906985
LNOL01000019
Betaproteobacteria
Alcaligenes faecalis [LNOL]
193179
193253
+
Val
CAC
[ENA]
¡û
>W1710995932
LQAS01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
620535
620609
+
Val
CAC
[ENA]
¡û
>W1711135932
LUZQ01000046
Betaproteobacteria
Burkholderiales bacterium Beta_01 [LUZQ]
31770
31844
+
Val
CAC
[ENA]
¡û
>W1711710492
MSZN01000005
Betaproteobacteria
Alcaligenes faecalis [MSZN]
12248
12174
-
Val
CAC
[ENA]
¡û
>W1711710567
MSZO01000011
Betaproteobacteria
Alcaligenes faecalis [MSZO]
12248
12174
-
Val
CAC
[ENA]
¡û
>W1711710590
MSZP01000002
Betaproteobacteria
Alcaligenes faecalis [MSZP]
738188
738262
+
Val
CAC
[ENA]
¡û
>W1711710669
MSZQ01000012
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
124804
124878
+
Val
CAC
[ENA]
¡û
>W1711710729
MSZR01000023
Betaproteobacteria
Alcaligenes faecalis [MSZR]
15105
15031
-
Val
CAC
[ENA]
¡û
>W1711711906
MTBI01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
156179
156105
-
Val
CAC
[ENA]
¡û
>C171115522
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
3214669
3214595
-
Val
CAC
-
¡û
>W131051778
AMXV01000034
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
176506
176580
+
Val
CAC
[ENA]
¡û
>W131223064
AUBT01000009
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
28671
28745
+
Val
CAC
[ENA]
¡û
>W141104413
AVOG02000008
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
9795
9721
-
Val
CAC
[ENA]
¡û
>W141237734
BBJQ01000007
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
15007
14933
-
Val
CAC
[ENA]
¡û
>WENV183733584
PJTY01005380
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1722
1648
-
Val
CAC
[ENA]
¢þ
>WENV183739490
PJUE01023797
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
301
375
+
Val
CAC
[ENA]
¢þ
>WENV183741217
PJUF01058806
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
398
472
+
Val
CAC
[ENA]
¢þ
>WENV170646028
JQGF01011117
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
1457
1383
-
Val
CAC
[ENA]
¢þ
>WENV170654985
JTFN01001123
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2681
2755
+
Val
CAC
[ENA]
¢þ
>WENV170655354
JTFN01024449
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
542
468
-
Val
CAC
[ENA]
¢þ
>WENV170656192
JTFO01003564
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
314
240
-
Val
CAC
[ENA]
¢þ
>WENV170656196
JTFO01003742
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
10609
10535
-
Val
CAC
[ENA]
¢þ
>WENV170705491
LNAO01001051
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
917
991
+
Val
CAC
[ENA]
¢þ
>WENV170706351
LNAP01002327
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
18970
19044
+
Val
CAC
[ENA]
¢þ
>WENV170707660
LNAP01028784
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
104
30
-
Val
CAC
[ENA]
¢þ
>WENV170708322
LNAP01069778
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
81
7
-
Val
CAC
[ENA]
¢þ
>WENV170966031
MTEV01012213
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1511
1437
-
Val
CAC
[ENA]
¢þ
>C181053241
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
3307164
3307090
-
Val
CAC
-
¡û
>C181088599
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
2984519
2984445
-
Val
CAC
-
¡û
>C191085278
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
3518340
3518266
-
Val
CAC
-
¡û
>C191091179
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
1802545
1802471
-
Val
CAC
-
¡û
>C191113984
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
186291
186217
-
Val
CAC
-
¡û
>C191149665
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
1105451
1105377
-
Val
CAC
-
¡û
>W1810062088
PDNV01000003
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
121996
122070
+
Val
CAC
[ENA]
¡û
>W1810062133
PDNW01000005
Betaproteobacteria
Pollutimonas subterranea JR1/69-3-13 [PDNW]
123213
123139
-
Val
CAC
[ENA]
¡û
>W1810583907
QEXO01000003
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
12902
12828
-
Val
CAC
[ENA]
¡û
>W1511321047
JQCV01000012
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
65406
65480
+
Val
CAC
[ENA]
¡û
>W1511537440
JZBR01000001
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
745409
745483
+
Val
CAC
[ENA]
¡û
>C161051356
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
3208634
3208708
+
Val
CAC
[Ensembl]
¡û
>W121091232
AKMR01000020
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
4531
4457
-
Val
CAC
[ENA]
¡û
>W1610093582
CYTB01000010
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
140640
140714
+
Val
CAC
[ENA]
¡û
>W1610765999
LNOL01000019
Betaproteobacteria
Alcaligenes faecalis [LNOL]
193179
193253
+
Val
CAC
[ENA]
¡û
>W1610850589
LQAS01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
620535
620609
+
Val
CAC
[ENA]
¡û
>W1610921544
LSUO01000029
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
60386
60460
+
Val
CAC
[ENA]
¡û
>W1610947052
LUZQ01000046
Betaproteobacteria
Burkholderiales bacterium Beta_01 [LUZQ]
31770
31844
+
Val
CAC
[ENA]
¡û
>W1710082547
BDHG01000008
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
15226
15152
-
Val
CAC
[ENA]
¡û
>W1710586430
FQXE01000021
Betaproteobacteria
Pollutimonas bauzanensis [FQXE]
76897
76971
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK