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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339609 (6 seq.)
>W131193354
ASOC01000035
Unclassified
Candidatus Omnitrophus fodinae OP3 bacterium SCGC AAA011-A17 [ASOC]
19973
19898
-
Ala
GGC
[ENA]
¡û
>W1910732045
MHFP01000087
Unclassified
Omnitrophica bacterium RIFCSPLOWO2_02_FULL_44_11 [MHFP]
1474
1400
-
Ala
GGC
[ENA]
¡û
>W1910732117
MHFR01000062
Unclassified
Omnitrophica bacterium RIFCSPLOWO2_12_FULL_44_17 [MHFR]
272
198
-
Ala
GGC
[ENA]
¡û
>W2010865475
MHFP01000087
Unclassified
Omnitrophica bacterium RIFCSPLOWO2_02_FULL_44_11 [MHFP]
1474
1400
-
Ala
GGC
[ENA]
¡û
>W2010865547
MHFR01000062
Unclassified
Omnitrophica bacterium RIFCSPLOWO2_12_FULL_44_17 [MHFR]
272
198
-
Ala
GGC
[ENA]
¡û
>WENV11100211
ADZX01000389
Sediment metagenome
630
555
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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